Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1473 156 4e-33 seq846 82.4 7e-11 >seq1473 Length=2736273 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || || || |||||| | | |||||||| || || | Sbjct 1453145 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1453204 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||||| || || ||||| || |||||||||||||| || || || || Sbjct 1453205 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453264 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | || |||| || ||||||||| ||||||| | ||| | ||||| ||||| Sbjct 1453265 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAA 1453324 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | ||| | || |||||| |||| |||||||| Sbjct 1453325 CATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453375 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || |||||| || | |||||||| || || | Sbjct 1453601 CATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAG 1453660 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | |||||| || || |||||||| |||||||||||||| || || || || Sbjct 1453661 TGATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1453720 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | || |||| || ||||||||| ||||||| | |||| | || || ||||| Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | || ||||| |||| |||||||| Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1453831 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || |||||| || | |||||||| || || | Sbjct 1452462 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1452521 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | |||||| | || ||||| || |||| |||||||| ||||| || ||| Sbjct 1452522 GATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCAA 1452581 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| ||| ||||||||||||||||| | ||| | || || |||||| Sbjct 1452582 CAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452641 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || |||||| |||| |||||||| Sbjct 1452642 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1452691 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || || || |||||| | | |||||||| || || | Sbjct 1452917 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1452976 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||||| || || ||||| || |||||||||||||| || || || || Sbjct 1452977 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453036 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | || |||| || ||||||||| ||||||| | || | || || ||||| Sbjct 1453037 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAA 1453096 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | || |||||| |||| |||||||| Sbjct 1453097 CATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453147 Score = 134 bits (148), Expect = 1e-26 Identities = 172/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGT----GGAAC 27042 ||||||||||||||| ||||| || || |||||| | || || |||||||| |||| Sbjct 1453829 CATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAGGGAA- 1453887 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || ||| | |||||| || || ||||| || ||||| |||||||| || || | Sbjct 1453888 -GT--GACACTGTTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTG 1453944 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | |||||| | || |||| || ||||||||| ||||||| | || | || || | Sbjct 1453945 ACCAACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACTCTCTCTGACT 1454004 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || ||||| || ||| | ||| | || ||||| |||| |||||||| Sbjct 1454005 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1454059 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044 ||||||||| ||||| || || || || ||||| | || || ||||| || || || | Sbjct 1452689 CATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAG 1452748 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | ||| | |||| | ||||| |||||||| |||||||||||||| || || || Sbjct 1452749 T--GACACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGAC 1452806 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | || |||| || ||||||||| ||||||| | ||| | || || ||| Sbjct 1452807 CAGCAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTAC 1452866 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| ||| | ||| | || ||||| |||| |||||||| Sbjct 1452867 AACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1452919 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044 |||||| |||||||| || || || || ||||| |||| || || || || || || | Sbjct 1453373 CATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAG 1453432 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | ||| | | || | || || |||||||| |||||||||||||| || || || Sbjct 1453433 T--GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGAC 1453490 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 |||||| | || |||| || ||||||||| | ||||| | ||| | || || ||| Sbjct 1453491 CAACAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTAC 1453550 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| ||| | ||| | || |||||| |||| |||||||| Sbjct 1453551 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453603 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044 ||||||||| ||||| || || || || || ||| | || |||||||| || || || | Sbjct 1454969 CATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAG 1455028 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | ||| || |||||| || ||| ||||| || ||||| ||||| || || || ||| Sbjct 1455029 T--GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGAT 1455086 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 |||||| | || |||| || ||||||||||| ||||| | || | || |||||| Sbjct 1455087 CAACAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTAC 1455146 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || || ||| | ||| | || ||||| |||| ||||| Sbjct 1455147 AACATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || ||||| || ||||| Sbjct 2587957 CATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACAATCACCCTTGAGGTTGAACCCAG 2588016 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| ||||| || ||||| |||||||| || || || || Sbjct 2588017 TGACACCATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 2588076 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || ||||| ||| | ||||| | || | || || ||||| Sbjct 2588077 GCAGAGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGCACACTGTCAGACTACAA 2588136 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| ||||||||||| ||| | ||| | || ||||| |||| |||||| Sbjct 2588137 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGTGGTGGC 2588185 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || ||||||||| | | || ||||| || || | Sbjct 1454285 CATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAG 1454344 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||||| ||||| |||| |||||||| |||||||| || || || || Sbjct 1454345 TGACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1454404 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || |||| |||||||| | | ||||||| ||| | || |||||||| Sbjct 1454405 GCAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAA 1454464 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || || |||||||| | |||||||| Sbjct 1454465 CATCCAGAAGGAGTCCACCCTCCACCATGTCCTGCGTTTGAGAGGTGGCAT 1454515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||| | ||||| || || || || |||||| | || || ||||| || ||| | Sbjct 1454741 CATGCAGTTGTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAAGCCAA 1454800 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | |||||| ||||| ||||| || ||||| ||||| || || || || || Sbjct 1454801 TGATACAGTTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1454860 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || | ||||| | ||| | || |||||||| Sbjct 1454861 ACAAAGGCTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTCTCTGATTACAA 1454920 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||| | || | ||| | || ||||| | || |||||||| Sbjct 1454921 CATCCAAAAGGAGGCTACGCTTCATCTCGTCCTGCGTCTACGAGGTGGCAT 1454971 >seq846 Length=1815462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||||||||||||||||||||| || | ||||| ||||||||| ||| | | || | Sbjct 796415 TAGGTTGTATGTGGTCTATTTGTGGCATCCACGACCAAGGATGGGCAGAGAGAGACGTTT 796474 Query 135708 TTGGCAAGATTCGCTATATGAACTA 135732 |||| ||||| ||||| |||||||| Sbjct 796475 TTGGAAAGATCCGCTACATGAACTA 796499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434715200687040