Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 156 4e-33
seq846 82.4 7e-11
>seq1473
Length=2736273
Score = 156 bits (172), Expect = 4e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| |||||||| || || || |||||| | | |||||||| || || |
Sbjct 1453145 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1453204
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | |||||| || || ||||| || |||||||||||||| || || || ||
Sbjct 1453205 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453264
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||| | || |||| || ||||||||| ||||||| | ||| | ||||| |||||
Sbjct 1453265 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAA 1453324
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| |||||||| ||| | ||| | || |||||| |||| ||||||||
Sbjct 1453325 CATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453375
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| |||||||| || || || || |||||| || | |||||||| || || |
Sbjct 1453601 CATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAG 1453660
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | |||||| || || |||||||| |||||||||||||| || || || ||
Sbjct 1453661 TGATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1453720
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||| | || |||| || ||||||||| ||||||| | |||| | || || |||||
Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | ||| | || ||||| |||| ||||||||
Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1453831
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| |||||||| || || || |||||| || | |||||||| || || |
Sbjct 1452462 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1452521
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | |||||| | || ||||| || |||| |||||||| ||||| || |||
Sbjct 1452522 GATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCAA 1452581
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || |||| ||| ||||||||||||||||| | ||| | || || ||||||
Sbjct 1452582 CAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452641
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | ||| | || |||||| |||| ||||||||
Sbjct 1452642 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1452691
Score = 141 bits (156), Expect = 8e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| |||||||| || || || |||||| | | |||||||| || || |
Sbjct 1452917 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1452976
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | |||||| || || ||||| || |||||||||||||| || || || ||
Sbjct 1452977 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453036
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||| | || |||| || ||||||||| ||||||| | || | || || |||||
Sbjct 1453037 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAA 1453096
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | ||| | || |||||| |||| ||||||||
Sbjct 1453097 CATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453147
Score = 134 bits (148), Expect = 1e-26
Identities = 172/235 (73%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGT----GGAAC 27042
||||||||||||||| ||||| || || |||||| | || || |||||||| ||||
Sbjct 1453829 CATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAGGGAA- 1453887
Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102
|| ||| | |||||| || || ||||| || ||||| |||||||| || || |
Sbjct 1453888 -GT--GACACTGTTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTG 1453944
Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162
| |||||| | || |||| || ||||||||| ||||||| | || | || || |
Sbjct 1453945 ACCAACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACTCTCTCTGACT 1454004
Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||| || ||||| || ||| | ||| | || ||||| |||| ||||||||
Sbjct 1454005 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1454059
Score = 131 bits (144), Expect = 1e-25
Identities = 170/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044
||||||||| ||||| || || || || ||||| | || || ||||| || || || |
Sbjct 1452689 CATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAG 1452748
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
| ||| | |||| | ||||| |||||||| |||||||||||||| || || ||
Sbjct 1452749 T--GACACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGAC 1452806
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|| ||| | || |||| || ||||||||| ||||||| | ||| | || || |||
Sbjct 1452807 CAGCAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTAC 1452866
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || || ||||| ||| | ||| | || ||||| |||| ||||||||
Sbjct 1452867 AACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1452919
Score = 131 bits (144), Expect = 1e-25
Identities = 170/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044
|||||| |||||||| || || || || ||||| |||| || || || || || || |
Sbjct 1453373 CATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAG 1453432
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
| ||| | | || | || || |||||||| |||||||||||||| || || ||
Sbjct 1453433 T--GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGAC 1453490
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|||||| | || |||| || ||||||||| | ||||| | ||| | || || |||
Sbjct 1453491 CAACAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTAC 1453550
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| || |||||||| ||| | ||| | || |||||| |||| ||||||||
Sbjct 1453551 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453603
Score = 131 bits (144), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044
||||||||| ||||| || || || || || ||| | || |||||||| || || || |
Sbjct 1454969 CATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAG 1455028
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
| ||| || |||||| || ||| ||||| || ||||| ||||| || || || |||
Sbjct 1455029 T--GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGAT 1455086
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|||||| | || |||| || ||||||||||| ||||| | || | || ||||||
Sbjct 1455087 CAACAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTAC 1455146
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| || || || || ||| | ||| | || ||||| |||| |||||
Sbjct 1455147 AACATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || || || |||||| | || || ||||| || |||||
Sbjct 2587957 CATGCAGATCTTCGTGAAGACGCTCACTGGCAAGACAATCACCCTTGAGGTTGAACCCAG 2588016
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| |||||| ||||| || ||||| |||||||| || || || ||
Sbjct 2588017 TGACACCATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 2588076
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | || || | || ||||| ||| | ||||| | || | || || |||||
Sbjct 2588077 GCAGAGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGCACACTGTCAGACTACAA 2588136
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||| ||||||||||| ||| | ||| | || ||||| |||| ||||||
Sbjct 2588137 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGTGGTGGC 2588185
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||||||||| || || || ||||||||| | | || ||||| || || |
Sbjct 1454285 CATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAG 1454344
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | |||||| ||||| |||| |||||||| |||||||| || || || ||
Sbjct 1454345 TGACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1454404
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | || |||| |||||||| | | ||||||| ||| | || ||||||||
Sbjct 1454405 GCAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAA 1454464
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || || |||||||| | ||||||||
Sbjct 1454465 CATCCAGAAGGAGTCCACCCTCCACCATGTCCTGCGTTTGAGAGGTGGCAT 1454515
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||| | ||||| || || || || |||||| | || || ||||| || ||| |
Sbjct 1454741 CATGCAGTTGTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAAGCCAA 1454800
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | |||||| ||||| ||||| || ||||| ||||| || || || || ||
Sbjct 1454801 TGATACAGTTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1454860
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || || || || | ||||| | ||| | || ||||||||
Sbjct 1454861 ACAAAGGCTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTCTCTGATTACAA 1454920
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| ||||||||| | || | ||| | || ||||| | || ||||||||
Sbjct 1454921 CATCCAAAAGGAGGCTACGCTTCATCTCGTCCTGCGTCTACGAGGTGGCAT 1454971
>seq846
Length=1815462
Score = 82.4 bits (90), Expect = 7e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707
|||||||||||||||||||||| || | ||||| ||||||||| ||| | | || |
Sbjct 796415 TAGGTTGTATGTGGTCTATTTGTGGCATCCACGACCAAGGATGGGCAGAGAGAGACGTTT 796474
Query 135708 TTGGCAAGATTCGCTATATGAACTA 135732
|||| ||||| ||||| ||||||||
Sbjct 796475 TTGGAAAGATCCGCTACATGAACTA 796499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434715200687040
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