Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq18074 113 2e-20 >seq18074 Length=241 Score = 113 bits (124), Expect = 2e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 4343 TGTGGGACGCTG-TCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATC 4401 |||||||| ||| ||||| |||||||| || | || ||||||||| || || | ||| Sbjct 14 TGTGGGAC-CTGATCATGACCTCCACCTACGATTTTGCTGAGCCGGGCTTCGTGCTGATC 72 Query 4402 GACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAACCCG 4461 ||| ||||| | |||||| ||||| ||| | || ||||||||||| Sbjct 73 GACCGGATCAATGAGAAGAACAACAACTGGTGGACGGAGAACATCCGCGCCACCAACCCC 132 Query 4462 TGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACCTGGTG 4521 ||||| |||||||| ||||| || | ||||||||||||||| |||||| | |||||| | Sbjct 133 TGCGGTGAGCAGCCCCTGCCGCCCTACGGCGCCTGCCTGCTCGGCTCCGTGAACCTGACG 192 Query 4522 CGCT 4525 |||| Sbjct 193 CGCT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176145782647180