Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq13431 87.8 2e-12 >seq13431 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 182865 CAACCACATGGATATGGAATTTACACGCAGATGCTCATGATTTTGATAAGCATTCTAGTG 182924 |||| |||||||| ||||| ||||| |||||||||||||| ||||||| || ||||| Sbjct 1 CAACAACATGGATTTGGAACTTACATGCAGATGCTCATGACTTTGATAGTCAAACTAGTT 60 Query 182925 ATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTGCTCATCTAGGTATCATCT 182984 | | |||| ||| | ||||| || ||||||||||| || ||| | || | Sbjct 61 CTTTAGAAGAAGTTTCTCGTAAAATTTTCAGTGCACACTTTGGACAATTAGCAGTAATAT 120 Query 182985 TTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTTCAAACTATACAGGATGGT 183044 | ||||||| || || | ||| || ||||| || ||||| || ||| |||| Sbjct 121 TCTTATGGATTAGTGGTATGCACTTCCATGGTGCATATTTCTCAAATTACTCAGCTTGGT 180 Query 183045 TGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTTGGCC 183090 | || ||| | || | || | || | ||||| |||||||| Sbjct 181 TAAATGATCCAGTTAATATTAAGCAAAGTTCACAAGTTGTTTGGCC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631132189319320