Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq696 167 2e-36
>seq696
Length=192186
Score = 167 bits (184), Expect = 2e-36
Identities = 179/234 (76%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607
|| |||||||| ||||||| ||||| || |||||||| || || | || || ||
Sbjct 54126 TCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGTGGACGAAGTCGCCCGGCTGG 54185
Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667
| ||| || || ||||||||||||||||| || ||||| || || |||||||| |||
Sbjct 54186 AGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGTAGCTGGCGATGTTGAAAGGC 54245
Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC- 6726
|| || | ||||| || || || || || || ||||||||||||||||| || ||||
Sbjct 54246 ACGCCCAGGCCCATATCGCCAGAGCGCTGGTACAGCTGGCAGGACAGCTCGCC-GTCGCA 54304
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|||||||| ||||| |||| ||||| || || |||||||||||||| || ||
Sbjct 54305 CACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCATCAGAGGCAGGTC 54358
Score = 167 bits (184), Expect = 2e-36
Identities = 179/234 (76%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623
|| || |||||||||||||| || || ||||| |||| ||||| |||||||| ||||
Sbjct 54358 GACCTGCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTGTGCCAGTTCTACGTGTGCGAC 54299
Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683
|| ||||||||||||||||| || || || || || || ||||| | || ||||| ||
Sbjct 54298 -GGCGAGCTGTCCTGCCAGCTGTACCAGCGCTCTGGCGATATGGGCCTGGGCGTGCCTTT 54240
Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCC 34743
|||||| || || ||||| || ||||||||||||||||| || || ||| | ||
Sbjct 54239 CAACATCGCCAGCTACGCCCTCCTCACGTACATGATCGCGCACATCACGGGACTCCAGCC 54180
Query 34744 TGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797
|| || | || || |||||||| || ||||| ||||||| |||||||| ||
Sbjct 54179 GGGCGACTTCGTCCACACGTTGGGCGACGCGCACGTCTACCTCAACCACATGGA 54126
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 7130 CCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGG 7189
|| |||||| ||||||||||||| ||||||||||| |||| | || |||||||| |||
Sbjct 56264 CCGCGAAGGCTGTATCGGGCCTGGGTGCCGAACACCGAGATGACGCCGGTCCCGGTGCGG 56323
Query 7190 TCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATA 7239
|| ||||||| | ||| | | ||||| ||||||||| | ||||||
Sbjct 56324 TCTCCCTTCCTGCGGCCGTGCTCCAGGATGAACGCCACCTGGTTCAGATA 56373
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 34106 TATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGACCGGACCGGG 34165
|||||| | ||||||||| ||||| | | ||| | ||||||| ||||| ||||||
Sbjct 56373 TATCTGAACCAGGTGGCGTTCATCCTGGAGCACGGCCGCAGGAAGGGAGACCGCACCGGG 56314
Query 34166 ACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215
|| || | |||| ||||||||||| ||||||||||||| |||||| ||
Sbjct 56313 ACCGGCGTCATCTCGGTGTTCGGCACCCAGGCCCGATACAGCCTTCGCGG 56264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448052966203440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |