Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq696 167 2e-36 >seq696 Length=192186 Score = 167 bits (184), Expect = 2e-36 Identities = 179/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 || |||||||| ||||||| ||||| || |||||||| || || | || || || Sbjct 54126 TCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGTGGACGAAGTCGCCCGGCTGG 54185 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | ||| || || ||||||||||||||||| || ||||| || || |||||||| ||| Sbjct 54186 AGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGTAGCTGGCGATGTTGAAAGGC 54245 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC- 6726 || || | ||||| || || || || || || ||||||||||||||||| || |||| Sbjct 54246 ACGCCCAGGCCCATATCGCCAGAGCGCTGGTACAGCTGGCAGGACAGCTCGCC-GTCGCA 54304 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| ||||| |||| ||||| || || |||||||||||||| || || Sbjct 54305 CACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCATCAGAGGCAGGTC 54358 Score = 167 bits (184), Expect = 2e-36 Identities = 179/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || || |||||||||||||| || || ||||| |||| ||||| |||||||| |||| Sbjct 54358 GACCTGCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTGTGCCAGTTCTACGTGTGCGAC 54299 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || ||||||||||||||||| || || || || || || ||||| | || ||||| || Sbjct 54298 -GGCGAGCTGTCCTGCCAGCTGTACCAGCGCTCTGGCGATATGGGCCTGGGCGTGCCTTT 54240 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCC 34743 |||||| || || ||||| || ||||||||||||||||| || || ||| | || Sbjct 54239 CAACATCGCCAGCTACGCCCTCCTCACGTACATGATCGCGCACATCACGGGACTCCAGCC 54180 Query 34744 TGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 || || | || || |||||||| || ||||| ||||||| |||||||| || Sbjct 54179 GGGCGACTTCGTCCACACGTTGGGCGACGCGCACGTCTACCTCAACCACATGGA 54126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7130 CCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGG 7189 || |||||| ||||||||||||| ||||||||||| |||| | || |||||||| ||| Sbjct 56264 CCGCGAAGGCTGTATCGGGCCTGGGTGCCGAACACCGAGATGACGCCGGTCCCGGTGCGG 56323 Query 7190 TCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATA 7239 || ||||||| | ||| | | ||||| ||||||||| | |||||| Sbjct 56324 TCTCCCTTCCTGCGGCCGTGCTCCAGGATGAACGCCACCTGGTTCAGATA 56373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34106 TATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGACCGGACCGGG 34165 |||||| | ||||||||| ||||| | | ||| | ||||||| ||||| |||||| Sbjct 56373 TATCTGAACCAGGTGGCGTTCATCCTGGAGCACGGCCGCAGGAAGGGAGACCGCACCGGG 56314 Query 34166 ACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215 || || | |||| ||||||||||| ||||||||||||| |||||| || Sbjct 56313 ACCGGCGTCATCTCGGTGTTCGGCACCCAGGCCCGATACAGCCTTCGCGG 56264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448052966203440