Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq37377 136 9e-27 seq1207 136 9e-27 seq1473 134 3e-26 seq4087 95.1 3e-14 seq691 95.1 3e-14 seq4821 91.5 4e-13 seq19626 86.0 1e-11 >seq37377 Length=16525 Score = 136 bits (150), Expect = 9e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || ||||| | || || ||||| || || || ||||| ||| | || || Sbjct 5614 CAAATCTATAATGTTATCGTAACTGCCCATGCTTTCGTAATAATTTTTTTTATAGTAATA 5673 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||||||| || ||||| || |||||||| ||||||||||| ||||| || |||||| Sbjct 5674 CCAATTATGATCGGAGGTTTTGGTAATTGATTAGTTCCTTTAATAATTGGAGCGCCTGAT 5733 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || || || | |||||||| |||||||||||| |||| ||||| || Sbjct 5734 ATAGCCTTCCCTCGGATAAACAATATGAGTTTTTGATTATTACCACCTTCTTT 5786 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||| | Sbjct 6190 ATACTTCAGGATGTCCAAAGAATCAGAATAAGTGTTGATAGAGAATAGGATCTCCTCCTC 6131 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | || || ||||| || | || || ||||| | ||| ||||||| Sbjct 6130 CAGAAGGGTCAAAGAATGTTGTGTTTAAATTCCGATCTGTTAAAA 6086 >seq1207 Length=14097 Score = 136 bits (150), Expect = 9e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| ||||||| ||| || | || || ||||| ||| ||||||||||||| | ||||| Sbjct 1419 CCAAATTTACAATGTTGTTGTAACAGCACATGCTTTTATTATGATTTTCTTCATGGTTAT 1478 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| ||||||| || || || ||||| ||||| ||||| |||| | ||||| ||||| Sbjct 1479 GCCTATTATGATTGGAGGGTTTGGAAACTGATTAGTTCCACTAATATTAGGTGCCCCTGA 1538 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 ||| || ||||| | | || || |||||||||||| | |||| ||||| ||| Sbjct 1539 TATAGCCTTTCCTCGAATGAATAACATAAGTTTTTGACTTTTACCTCCTTCATTA 1593 >seq1473 Length=2736273 Score = 134 bits (148), Expect = 3e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||| ||||| ||||| || ||||||| ||||| || | || || Sbjct 2588179 ACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGT 2588120 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| ||||| ||||| ||||| | | || ||||| || ||||| || Sbjct 2588119 GCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 2588060 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| ||||| ||| || || ||| || |||||||| || ||| || || | Sbjct 2588059 TTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAA 2588001 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 2588000 GGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || || || || | || ||||||| |||||||| | | || Sbjct 1454962 CGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTA 1454903 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||||||||| ||||| ||||| || | ||||||||| || ||||||||| Sbjct 1454902 CGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCT 1454843 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||| ||| || | || || || ||| || || | Sbjct 1454842 TCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAGG 1454783 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | |||| ||||| Sbjct 1454782 GTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| |||||||| || || || |||| ||||| || | | || | ||||| Sbjct 2587942 CAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATC 2587883 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||| ||||| ||||| ||||| | | || ||||| || ||||| ||||||||||| Sbjct 2587882 TTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587823 Query 225621 TTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||| ||| |||| ||| ||||||||||| || ||| || || | || || | Sbjct 2587822 CTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGG 2587764 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| || | || || | ||| | ||||| Sbjct 2587763 TCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| ||||| |||| ||||| || | | || | ||||| Sbjct 1452446 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452387 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||| || ||||| ||||| | | ||| || || || ||||||||||||||||| Sbjct 1452386 TTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTC 1452327 Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||| ||| || || ||| || | ||||| | ||| || || | ||||| | Sbjct 1452326 CTGGAT-TTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGG 1452268 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||| || | || || | || | ||||||||| Sbjct 1452267 TCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 111 bits (122), Expect = 4e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| || || |||| ||||| || | | ||| | || || Sbjct 2590189 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTC 2590248 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | | || ||||| || ||||| ||||||||||| Sbjct 2590249 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 2590308 Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||| ||| || || ||| || || ||||| || || || || | ||||| | Sbjct 2590309 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2590367 Query 225680 TCTTGCCCGT 225689 ||||||| || Sbjct 2590368 TCTTGCCAGT 2590377 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||||||||| ||||| |||||||| || |||| ||||| || | | ||| Sbjct 1454050 CGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 1453991 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || ||||| || || | | |||||||| || ||||| ||| Sbjct 1453990 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453931 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||||||| || | ||||| || || || | Sbjct 1453930 TCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGG 1453871 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | ||||| Sbjct 1453870 GTGATGGTCTTGCCAGTAAGGGTTTT 1453845 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||||||||| || || || || |||||||||| ||||| || | || || Sbjct 1454278 CGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTG 1454219 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| ||||| ||||| ||||| | | || || || || ||||| ||| Sbjct 1454218 CGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCT 1454159 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||||||| || | ||||| | || || || | Sbjct 1454158 TCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGG 1454099 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || |||| || | ||||| Sbjct 1454098 GTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| || || |||| ||||| || | | || | ||||| Sbjct 2587714 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATC 2587655 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| || || | | || ||||| || ||||| ||||||||||| Sbjct 2587654 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587595 Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||| ||| || || ||| || || ||||| || || || || | ||||| | Sbjct 2587594 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2587536 Query 225680 TCTTGCCCGT 225689 ||||||| || Sbjct 2587535 TCTTGCCAGT 2587526 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||||||||| ||||| || |||||||| |||| |||||||| | | || Sbjct 1455190 CGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTG 1455131 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| || || ||||| || || | | ||||| || || ||||| ||| Sbjct 1455130 CGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCT 1455071 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACA 225639 |||||||| ||||| ||| || |||||| Sbjct 1455070 TCCTTGTCCTGGAT-TTTGGCTTTCACA 1455044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/137 (75%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC--TCCCA 225558 ||||||||| || ||||| | ||| ||||||| ||||| || | | || | || || Sbjct 1454726 CAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGATCACA 1454667 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || | ||||| || ||||| ||||| || | || || | |||||||||||||||||| Sbjct 1454666 TC--CCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGGAATACCTTCCTTG 1454609 Query 225619 TCTTGGATCTTTTGCTT 225635 |||| ||| ||| |||| Sbjct 1454608 TCTTTGAT-TTTGGCTT 1454593 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||| ||||||| ||||| || || |||| |||||||| | | ||| |||| Sbjct 1454498 CAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATC 1454439 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || |||| || || || || | | || ||||| || ||||| ||||||||||| Sbjct 1454438 TTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 1454379 Query 225621 TTGGAT 225626 |||||| Sbjct 1454378 TTGGAT 1454373 >seq4087 Length=201 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| ||||| | | || || || || ||| |||| || |||||| | ||||| || Sbjct 145 TTTATAACGTCGTGGTAACCGCTCACGCTTTTATTATAATCTTCTTTATAGTTATACCTA 86 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || || ||||| ||| | |||||||||||| | |||||||||||||| | Sbjct 85 TTATAATTGGAGGGTTTGGAAACTGACTAGTTCCTTTAATGCTAGGTGCTCCTGATATAG 26 Query 7676 CTTTTCCAAGGCTTAACAATATAAG 7700 | || || | | ||||| ||||| Sbjct 25 CATTCCCTCGAATAAACAACATAAG 1 >seq691 Length=505239 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| || ||||| ||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 503067 ATACTTCAGGTTGTCCAAAGAATCAGAATAAGTGTTGGTAAAGAATAGGGTCTCCTCCTC 503008 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | || || |||||||| | || || ||||||| ||| |||| || Sbjct 503007 CAGAAGGGTCAAAAAATGTTGTGTTTAAATTTCGATCTGTTAGAA 502963 >seq4821 Length=205 Score = 91.5 bits (100), Expect = 4e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||| || |||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 31 AGGTGGCACAGACCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTTG 90 Query 372683 TAAAACGATGTATAGGGTCTGAC 372705 ||||||| |||||||||||||| Sbjct 91 CAAAACGACGTATAGGGTCTGAC 113 >seq19626 Length=252 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| ||||| | | || || || || || |||| ||||||||| | |||||||| Sbjct 108 TTTATAACGTCGTAGTAACCGCTCACGCTTTCATTATAATTTTCTTTATAGTTATGCCTA 167 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || || || || ||| | ||||||||||| | ||||| |||||||| | Sbjct 168 TTATAATTGGGGGATTTGGGAACTGACTAGTTCCTTTAATACTAGGTGCCCCTGATATAG 227 Query 7676 CTTTTCCAAGGCTTAACAATATAAG 7700 | || || | | ||||| ||||| Sbjct 228 CATTCCCTCGAATAAACAACATAAG 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191960105379638