Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq37377 136 9e-27
seq1207 136 9e-27
seq1473 134 3e-26
seq4087 95.1 3e-14
seq691 95.1 3e-14
seq4821 91.5 4e-13
seq19626 86.0 1e-11
>seq37377
Length=16525
Score = 136 bits (150), Expect = 9e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| | || || ||||| | || || ||||| || || || ||||| ||| | || ||
Sbjct 5614 CAAATCTATAATGTTATCGTAACTGCCCATGCTTTCGTAATAATTTTTTTTATAGTAATA 5673
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| ||||||| || ||||| || |||||||| ||||||||||| ||||| || ||||||
Sbjct 5674 CCAATTATGATCGGAGGTTTTGGTAATTGATTAGTTCCTTTAATAATTGGAGCGCCTGAT 5733
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|| || || || || | |||||||| |||||||||||| |||| ||||| ||
Sbjct 5734 ATAGCCTTCCCTCGGATAAACAATATGAGTTTTTGATTATTACCACCTTCTTT 5786
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||| |
Sbjct 6190 ATACTTCAGGATGTCCAAAGAATCAGAATAAGTGTTGATAGAGAATAGGATCTCCTCCTC 6131
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
| || || ||||| || | || || ||||| | ||| |||||||
Sbjct 6130 CAGAAGGGTCAAAGAATGTTGTGTTTAAATTCCGATCTGTTAAAA 6086
>seq1207
Length=14097
Score = 136 bits (150), Expect = 9e-27
Identities = 135/175 (77%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| ||||||| ||| || | || || ||||| ||| ||||||||||||| | |||||
Sbjct 1419 CCAAATTTACAATGTTGTTGTAACAGCACATGCTTTTATTATGATTTTCTTCATGGTTAT 1478
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
||| ||||||| || || || ||||| ||||| ||||| |||| | ||||| |||||
Sbjct 1479 GCCTATTATGATTGGAGGGTTTGGAAACTGATTAGTTCCACTAATATTAGGTGCCCCTGA 1538
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725
||| || ||||| | | || || |||||||||||| | |||| ||||| |||
Sbjct 1539 TATAGCCTTTCCTCGAATGAATAACATAAGTTTTTGACTTTTACCTCCTTCATTA 1593
>seq1473
Length=2736273
Score = 134 bits (148), Expect = 3e-26
Identities = 165/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||||||||| ||||| ||||| || ||||||| ||||| || | || ||
Sbjct 2588179 ACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGT 2588120
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||||||||| ||||| ||||| ||||| | | || ||||| || ||||| ||
Sbjct 2588119 GCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 2588060
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||||||| ||||| ||| || || ||| || |||||||| || ||| || || |
Sbjct 2588059 TTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAA 2588001
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | |||||
Sbjct 2588000 GGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Score = 123 bits (136), Expect = 6e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | |||||| || || || || | || ||||||| |||||||| | | ||
Sbjct 1454962 CGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTA 1454903
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||||||||||||||| ||||| ||||| || | ||||||||| || |||||||||
Sbjct 1454902 CGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCT 1454843
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| ||||| || ||| ||| || | || || || ||| || || |
Sbjct 1454842 TCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCAACCTCAAGG 1454783
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | |||| |||||
Sbjct 1454782 GTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 122 bits (134), Expect = 2e-22
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| |||||||| || || || |||| ||||| || | | || | |||||
Sbjct 2587942 CAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATC 2587883
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|||||| ||||| ||||| ||||| | | || ||||| || ||||| |||||||||||
Sbjct 2587882 TTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587823
Query 225621 TTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
||||| ||| |||| ||| ||||||||||| || ||| || || | || || |
Sbjct 2587822 CTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGG 2587764
Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||| || | || || | ||| | |||||
Sbjct 2587763 TCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730
Score = 114 bits (126), Expect = 3e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||| ||||| |||| ||||| || | | || | |||||
Sbjct 1452446 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 1452387
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | ||| || ||||| ||||| | | ||| || || || |||||||||||||||||
Sbjct 1452386 TTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTC 1452327
Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
||||| ||| || || ||| || | ||||| | ||| || || | ||||| |
Sbjct 1452326 CTGGAT-TTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGG 1452268
Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||| || | || || | || | |||||||||
Sbjct 1452267 TCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231
Score = 111 bits (122), Expect = 4e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||| || || |||| ||||| || | | ||| | || ||
Sbjct 2590189 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTC 2590248
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| | | || ||||| || ||||| |||||||||||
Sbjct 2590249 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 2590308
Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
||||| ||| || || ||| || || ||||| || || || || | ||||| |
Sbjct 2590309 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2590367
Query 225680 TCTTGCCCGT 225689
||||||| ||
Sbjct 2590368 TCTTGCCAGT 2590377
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||||||||| ||||| |||||||| || |||| ||||| || | | |||
Sbjct 1454050 CGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 1453991
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || ||||| || || | | |||||||| || ||||| |||
Sbjct 1453990 CGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCT 1453931
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| ||||| || ||||||| || | ||||| || || || |
Sbjct 1453930 TCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGG 1453871
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | |||||
Sbjct 1453870 GTGATGGTCTTGCCAGTAAGGGTTTT 1453845
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||||||||| || || || || |||||||||| ||||| || | || ||
Sbjct 1454278 CGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTG 1454219
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||||| ||||| ||||| ||||| | | || || || || ||||| |||
Sbjct 1454218 CGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCT 1454159
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| ||||| || ||||||| || | ||||| | || || || |
Sbjct 1454158 TCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGG 1454099
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || |||| || | |||||
Sbjct 1454098 GTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 105 bits (116), Expect = 2e-17
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||| || || |||| ||||| || | | || | |||||
Sbjct 2587714 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATC 2587655
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| || || | | || ||||| || ||||| |||||||||||
Sbjct 2587654 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587595
Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
||||| ||| || || ||| || || ||||| || || || || | ||||| |
Sbjct 2587594 CTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGG 2587536
Query 225680 TCTTGCCCGT 225689
||||||| ||
Sbjct 2587535 TCTTGCCAGT 2587526
Score = 98.7 bits (108), Expect = 2e-15
Identities = 112/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||||||||| ||||| || |||||||| |||| |||||||| | | ||
Sbjct 1455190 CGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTG 1455131
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||||| || || ||||| || || | | ||||| || || ||||| |||
Sbjct 1455130 CGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCT 1455071
Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACA 225639
|||||||| ||||| ||| || ||||||
Sbjct 1455070 TCCTTGTCCTGGAT-TTTGGCTTTCACA 1455044
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/137 (75%), Gaps = 5/137 (4%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC--TCCCA 225558
||||||||| || ||||| | ||| ||||||| ||||| || | | || | || ||
Sbjct 1454726 CAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGATCACA 1454667
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| | ||||| || ||||| ||||| || | || || | ||||||||||||||||||
Sbjct 1454666 TC--CCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCGGAATACCTTCCTTG 1454609
Query 225619 TCTTGGATCTTTTGCTT 225635
|||| ||| ||| ||||
Sbjct 1454608 TCTTTGAT-TTTGGCTT 1454593
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||| ||||||| ||||| || || |||| |||||||| | | ||| ||||
Sbjct 1454498 CAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATC 1454439
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| || |||| || || || || | | || ||||| || ||||| |||||||||||
Sbjct 1454438 TTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 1454379
Query 225621 TTGGAT 225626
||||||
Sbjct 1454378 TTGGAT 1454373
>seq4087
Length=201
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615
|||| ||||| | | || || || || ||| |||| || |||||| | ||||| ||
Sbjct 145 TTTATAACGTCGTGGTAACCGCTCACGCTTTTATTATAATCTTCTTTATAGTTATACCTA 86
Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675
|||| || || || || ||||| ||| | |||||||||||| | |||||||||||||| |
Sbjct 85 TTATAATTGGAGGGTTTGGAAACTGACTAGTTCCTTTAATGCTAGGTGCTCCTGATATAG 26
Query 7676 CTTTTCCAAGGCTTAACAATATAAG 7700
| || || | | ||||| |||||
Sbjct 25 CATTCCCTCGAATAAACAACATAAG 1
>seq691
Length=505239
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| |||||| || ||||| ||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct 503067 ATACTTCAGGTTGTCCAAAGAATCAGAATAAGTGTTGGTAAAGAATAGGGTCTCCTCCTC 503008
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
| || || |||||||| | || || ||||||| ||| |||| ||
Sbjct 503007 CAGAAGGGTCAAAAAATGTTGTGTTTAAATTTCGATCTGTTAGAA 502963
>seq4821
Length=205
Score = 91.5 bits (100), Expect = 4e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682
||||| ||||| || |||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 31 AGGTGGCACAGACCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTTG 90
Query 372683 TAAAACGATGTATAGGGTCTGAC 372705
||||||| ||||||||||||||
Sbjct 91 CAAAACGACGTATAGGGTCTGAC 113
>seq19626
Length=252
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615
|||| ||||| | | || || || || || |||| ||||||||| | ||||||||
Sbjct 108 TTTATAACGTCGTAGTAACCGCTCACGCTTTCATTATAATTTTCTTTATAGTTATGCCTA 167
Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675
|||| || || || || || || ||| | ||||||||||| | ||||| |||||||| |
Sbjct 168 TTATAATTGGGGGATTTGGGAACTGACTAGTTCCTTTAATACTAGGTGCCCCTGATATAG 227
Query 7676 CTTTTCCAAGGCTTAACAATATAAG 7700
| || || | | ||||| |||||
Sbjct 228 CATTCCCTCGAATAAACAACATAAG 252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191960105379638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |