Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 298 8e-76
seq28210 109 8e-19
seq354 89.7 7e-13
>seq1148
Length=2189075
Score = 298 bits (330), Expect = 8e-76
Identities = 1235/1939 (64%), Gaps = 13/1939 (1%)
Strand=Plus/Plus
Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120
||||| || || || |||| | |||||| || | | | | || || || || ||
Sbjct 533031 TTCTTCATGTCCTCGCTCCATAGCCCCCTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTG 533090
Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180
|| || || || || || | || || || ||||| || || ||||| || | ||
Sbjct 533091 ACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCA 533150
Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240
| || || ||||| || | || || ||||| || || || ||||| || |||| ||
Sbjct 533151 ATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGC 533210
Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300
| || ||||| | ||| || | ||| || || || || || |||| ||||| ||
Sbjct 533211 AGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGC 533270
Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360
| || | | ||| | || || || || || || || || || || ||
Sbjct 533271 GGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCC 533330
Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420
|| || || || || || | | || || || || || || |||| || ||
Sbjct 533331 GGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCG 533390
Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480
|| || | || ||||| |||| ||||||| ||| || || || ||||| ||
Sbjct 533391 TAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGC 533450
Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540
| | | ||||| ||||| || || | ||||| || || || ||||| || | ||
Sbjct 533451 TGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGG 533510
Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600
| | | ||||| | || || || | || || || || ||||| || || | |||
Sbjct 533511 CGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTG 533570
Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660
|| || | || | ||||| ||| || || || || || || | | ||
Sbjct 533571 AGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCG 533630
Query 77661 A---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717
| || ||||||| | || | || ||||| || || || || ||||| | |
Sbjct 533631 GGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGG 533690
Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777
||| |||| | ||||| || || || || || || ||||| |||||||| || ||
Sbjct 533691 CTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGC 533750
Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837
||||||||||| |||||||| ||||| || || || |||| || || || || ||
Sbjct 533751 TGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTC 533810
Query 77838 TGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTATCGCC 77895
|| || ||||| || | | ||| || || || ||||| | || ||| || |
Sbjct 533811 TGAGACTCGATGATGGCGTACCACAC--CTGCTGGGCTTTCACCACCCGCTTGACCCGGC 533868
Query 77896 TCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953
||| | ||||| || ||| | |||| ||||| ||||| ||||| || ||||
Sbjct 533869 CCTCCTTCTCATAGCGTGTGTACAAAGCC--TCAAACTCATCACCCCAGCACTCGTCCAG 533926
Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013
|||||||| |||||||| ||||| | |||||||| | || || | |||||
Sbjct 533927 GCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCAT 533986
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
|| ||||| || ||||| ||| | | || || || |||| | || || || || ||
Sbjct 533987 GAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCC 534046
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
||| ||||| || || || || || || | || ||| | ||||| || || || || ||
Sbjct 534047 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACAT 534106
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | || || || || || |||||||| || | || | || ||||| || ||
Sbjct 534107 GGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTA 534166
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|| | || ||| || | | ||||| || | ||||| || || | || || || ||
Sbjct 534167 GACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC 534226
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
| | | || || || | | | || || || |||||| || || || || ||
Sbjct 534227 AGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGC 534286
Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373
|| | || | || |||||||| || || || ||||| ||| ||||| || || ||
Sbjct 534287 ACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAA 534346
Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433
||||| |||| || | | || || || || || | || || || || |||||
Sbjct 534347 GCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGT 534406
Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493
|||||| | || ||||| || ||||| || ||||| || | || | | | ||
Sbjct 534407 GAACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTG 534466
Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553
|| || ||||| || ||||||| ||| ||||| || | || || ||| || ||
Sbjct 534467 GATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGAT 534526
Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613
|| | || || || |||| || || || ||||| | ||||| || ||||| |
Sbjct 534527 CTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCG 534586
Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT 78673
||||| || || | || || || || |||| | ||||| |||| | |
Sbjct 534587 GTCGTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCA-GCGTCT 534645
Query 78674 AGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTT 78732
|| || || ||||| || | | ||| || || || ||||| || | || |
Sbjct 534646 CCTTGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCT 534705
Query 78733 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTG 78792
|||| ||||| || || | || || || |||||||| || || || || || || | |
Sbjct 534706 CCATGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCG 534765
Query 78793 CAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTA 78852
| || | || ||||| || || || | || || ||||| || || || ||||| |
Sbjct 534766 CTGCCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCA 534825
Query 78853 AAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGA 78912
|||| | ||| | || || || ||| | || || || || || || ||||||| ||
Sbjct 534826 GCGTATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGA 534885
Query 78913 TTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATG 78972
| | | || || || || || | ||| | ||||| || | || || || || |
Sbjct 534886 TCTGAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGG 534945
Query 78973 TGATTTTATCAAATATAAC 78991
|||||||||| || || ||
Sbjct 534946 TGATTTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 109 bits (120), Expect = 8e-19
Identities = 252/374 (67%), Gaps = 7/374 (2%)
Strand=Plus/Minus
Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446
|| ||||| || ||| || || || ||||| || | ||| ||| |||| || |||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506
|| || || || || ||||| || || ||| | ||||||| | || |||||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 48507 GT-ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565
| ||||||| | |||||||||| || || || || |||||| ||||| ||||| ||
Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT---TATTCCAGTCATTGAT 48622
|| | ||| || || ||||| ||||| | | || | | ||||| || |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682
||||| || |||| ||||| || |||||||| | ||||| ||||||||||
Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166
Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTTTTGCAA 48741
| ||| | ||| || ||| || || ||||| || |||| | || | ||| ||||||
Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106
Query 48742 GGATAGGTTCCATG 48755
||||| ||||||
Sbjct 105 -AATAGGCTCCATG 93
>seq354
Length=3526367
Score = 89.7 bits (98), Expect = 7e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792
|||||||| || | ||| || ||||||| || || || || || ||||||||||| |
Sbjct 778871 ATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTGCTCTTCCCA 778930
Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851
||||| | |||||| || || || ||||||| || |||||| |||| || ||||| ||
Sbjct 778931 TTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTGGGACTCGATGAT 778989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694344242053280
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