Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1148 298 8e-76 seq28210 109 8e-19 seq354 89.7 7e-13 >seq1148 Length=2189075 Score = 298 bits (330), Expect = 8e-76 Identities = 1235/1939 (64%), Gaps = 13/1939 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||| | |||||| || | | | | || || || || || Sbjct 533031 TTCTTCATGTCCTCGCTCCATAGCCCCCTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTG 533090 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || || || | || || || ||||| || || ||||| || | || Sbjct 533091 ACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCA 533150 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| || | || || ||||| || || || ||||| || |||| || Sbjct 533151 ATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGC 533210 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || ||||| | ||| || | ||| || || || || || |||| ||||| || Sbjct 533211 AGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGC 533270 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 | || | | ||| | || || || || || || || || || || || Sbjct 533271 GGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCC 533330 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 || || || || || || | | || || || || || || |||| || || Sbjct 533331 GGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCG 533390 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 || || | || ||||| |||| ||||||| ||| || || || ||||| || Sbjct 533391 TAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGC 533450 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 | | | ||||| ||||| || || | ||||| || || || ||||| || | || Sbjct 533451 TGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGG 533510 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 | | | ||||| | || || || | || || || || ||||| || || | ||| Sbjct 533511 CGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTG 533570 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 || || | || | ||||| ||| || || || || || || | | || Sbjct 533571 AGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCG 533630 Query 77661 A---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | || ||||||| | || | || ||||| || || || || ||||| | | Sbjct 533631 GGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGG 533690 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 ||| |||| | ||||| || || || || || || ||||| |||||||| || || Sbjct 533691 CTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGC 533750 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 ||||||||||| |||||||| ||||| || || || |||| || || || || || Sbjct 533751 TGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTC 533810 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTATCGCC 77895 || || ||||| || | | ||| || || || ||||| | || ||| || | Sbjct 533811 TGAGACTCGATGATGGCGTACCACAC--CTGCTGGGCTTTCACCACCCGCTTGACCCGGC 533868 Query 77896 TCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 ||| | ||||| || ||| | |||| ||||| ||||| ||||| || |||| Sbjct 533869 CCTCCTTCTCATAGCGTGTGTACAAAGCC--TCAAACTCATCACCCCAGCACTCGTCCAG 533926 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 |||||||| |||||||| ||||| | |||||||| | || || | ||||| Sbjct 533927 GCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCAT 533986 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || ||||| || ||||| ||| | | || || || |||| | || || || || || Sbjct 533987 GAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCC 534046 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||| ||||| || || || || || || | || ||| | ||||| || || || || || Sbjct 534047 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACAT 534106 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || || || || || |||||||| || | || | || ||||| || || Sbjct 534107 GGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTA 534166 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 || | || ||| || | | ||||| || | ||||| || || | || || || || Sbjct 534167 GACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC 534226 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | || || || | | | || || || |||||| || || || || || Sbjct 534227 AGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGC 534286 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || | || | || |||||||| || || || ||||| ||| ||||| || || || Sbjct 534287 ACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAA 534346 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||||| |||| || | | || || || || || | || || || || ||||| Sbjct 534347 GCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGT 534406 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 |||||| | || ||||| || ||||| || ||||| || | || | | | || Sbjct 534407 GAACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTG 534466 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || ||||| || ||||||| ||| ||||| || | || || ||| || || Sbjct 534467 GATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGAT 534526 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 || | || || || |||| || || || ||||| | ||||| || ||||| | Sbjct 534527 CTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCG 534586 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT 78673 ||||| || || | || || || || |||| | ||||| |||| | | Sbjct 534587 GTCGTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCA-GCGTCT 534645 Query 78674 AGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTT 78732 || || || ||||| || | | ||| || || || ||||| || | || | Sbjct 534646 CCTTGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCT 534705 Query 78733 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTG 78792 |||| ||||| || || | || || || |||||||| || || || || || || | | Sbjct 534706 CCATGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCG 534765 Query 78793 CAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTA 78852 | || | || ||||| || || || | || || ||||| || || || ||||| | Sbjct 534766 CTGCCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCA 534825 Query 78853 AAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGA 78912 |||| | ||| | || || || ||| | || || || || || || ||||||| || Sbjct 534826 GCGTATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGA 534885 Query 78913 TTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATG 78972 | | | || || || || || | ||| | ||||| || | || || || || | Sbjct 534886 TCTGAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGG 534945 Query 78973 TGATTTTATCAAATATAAC 78991 |||||||||| || || || Sbjct 534946 TGATTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 109 bits (120), Expect = 8e-19 Identities = 252/374 (67%), Gaps = 7/374 (2%) Strand=Plus/Minus Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 || ||||| || ||| || || || ||||| || | ||| ||| |||| || ||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 || || || || || ||||| || || ||| | ||||||| | || ||||| Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 48507 GT-ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | ||||||| | |||||||||| || || || || |||||| ||||| ||||| || Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT---TATTCCAGTCATTGAT 48622 || | ||| || || ||||| ||||| | | || | | ||||| || | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||||| || |||| ||||| || |||||||| | ||||| |||||||||| Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTTTTGCAA 48741 | ||| | ||| || ||| || || ||||| || |||| | || | ||| |||||| Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106 Query 48742 GGATAGGTTCCATG 48755 ||||| |||||| Sbjct 105 -AATAGGCTCCATG 93 >seq354 Length=3526367 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || | ||| || ||||||| || || || || || ||||||||||| | Sbjct 778871 ATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTGCTCTTCCCA 778930 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || ||||||| || |||||| |||| || ||||| || Sbjct 778931 TTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTGGGACTCGATGAT 778989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694344242053280