Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 345 6e-90
seq28210 132 7e-26
>seq1148
Length=2189075
Score = 345 bits (382), Expect = 6e-90
Identities = 1206/1875 (64%), Gaps = 17/1875 (1%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|| || || || || | || || || ||||| || || ||||| || | || | ||
Sbjct 533097 TGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGAC 533156
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|| ||||| || | || || ||||| || || || ||||| || |||| || | ||
Sbjct 533157 TCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 533216
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
||||| | ||| || | ||| || || || || || |||| ||||| || |
Sbjct 533217 TTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTG 533276
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961
|| | | ||| | || || || || || || ||||| || || || ||
Sbjct 533277 GGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTAC 533336
Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021
|| ||||| | |||| || | || || ||||| || ||||| | ||| |||| ||
Sbjct 533337 GTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAG 533396
Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081
| || ||||| |||| |||| || |||||| || | || ||||| || | |
Sbjct 533397 AGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGC 533456
Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141
| ||||| || || || || || ||||| || || || ||||| || | || | | |
Sbjct 533457 ATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATG 533516
Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201
||||| | || || || | ||||| || || || || || || | ||||| ||
Sbjct 533517 TTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTC 533576
Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TC 76258
|||| | ||||| ||| || || || || || || | | || |
Sbjct 533577 TTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTG 533636
Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGG 76316
|| |||| || || || | || ||||| || || ||||| ||||| | | || |||
Sbjct 533637 ACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGC--TGG 533694
Query 76317 CATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGT 76376
|||| | ||||||||||| || || || |||||||| || || || || || ||||
Sbjct 533695 TGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 533754
Query 76377 TGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG 76436
||||||| || |||| ||||| || || | |||| || || || || |||| |
Sbjct 533755 TGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAG 533814
Query 76437 ATTCGATAATAGATTTCCAGACGACT-CTAG-CTTTTATTATAGATTTGTATCGCTTCTC 76494
| ||||| || | | ||| || || || | |||| | | ||| || |||
Sbjct 533815 ACTCGATGATGGCGTACCACAC--CTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTC 533872
Query 76495 TCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGG 76554
| ||||| |||| || || ||||| ||||| ||||| || |||| |||||
Sbjct 533873 CTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCCAGG 533932
Query 76555 ACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAG 76614
|| ||||| |||||||| | ||||| || | || |||| ||||| || ||
Sbjct 533933 GCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAG 533992
Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674
||| || ||||| ||| | | || || || |||| | | || || || ||||| ||
Sbjct 533993 ATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTT 534052
Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 76734
||| || || || ||||| || | || ||| | ||||| || || || || || || |
Sbjct 534053 CTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAA 534112
Query 76735 AACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCT 76794
| || || || || || |||||||| || | || | || ||||| || || || |
Sbjct 534113 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACG 534172
Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854
|| ||| || | | |||||| || | ||||| || || | || || || ||| |
Sbjct 534173 CAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGA 534232
Query 76855 ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCG 76914
||| || || | | | ||| || || |||||| ||| ||||| || ||||| |
Sbjct 534233 ACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTG 534292
Query 76915 TTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
|| | ||||| |||||||| || || || || ||| ||||| || || || |||||
Sbjct 534293 CTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCT 534352
Query 76975 AGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034
|||| || | | || || || || || | || || || || || ||||||||
Sbjct 534353 GGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCA 534412
Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCC 77094
| | || ||||| || ||||| || ||||| | || || | | || || ||
Sbjct 534413 TCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCC 534472
Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154
|| || || ||||||| ||| ||||| || || ||| | ||| || || || |
Sbjct 534473 CACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAG 534532
Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214
|| || || |||| || || || ||||| | ||||| || ||||| | |||||
Sbjct 534533 CAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTA 534592
Query 77215 AATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA---TGACAGTGGT 77271
|| || |||| || || |||||| | | ||||| |||| | | |||
Sbjct 534593 GATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGTCTCCTTGG- 534651
Query 77272 AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCAT 77331
| || || || || | | ||| || || || ||||| || | ||| |||||
Sbjct 534652 --AGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCAT 534709
Query 77332 TACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGC 77391
|| ||||| || | || || || |||||||| || || || || || || | || ||
Sbjct 534710 GACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGC 534769
Query 77392 TAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGT 77451
| || |||||||| || || | || ||| ||||| || || || ||||| | ||
Sbjct 534770 CAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGT 534829
Query 77452 ATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTT 77511
||| | || | || || || || | || || || || || || ||||||| || |
Sbjct 534830 ATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTG 534889
Query 77512 GATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGAT 77571
|| || || || || | ||| | ||||| || | || || || || |||||
Sbjct 534890 AGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGAT 534949
Query 77572 TTTATCAAACATGAC 77586
|||||| ||||||||
Sbjct 534950 TTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 132 bits (146), Expect = 7e-26
Identities = 249/360 (69%), Gaps = 7/360 (2%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
||| || ||||| ||||| || | ||| ||| |||||||||||||||| || ||
Sbjct 450 ATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCAT 391
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTT 47008
|| ||||| || || ||| | | ||||| | | || ||||| | |||||||| |
Sbjct 390 GATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCT 332
Query 47009 CAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068
||| |||||| || ||||| || |||||| ||||| ||||| ||||| | ||| || |
Sbjct 331 CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTA 272
Query 47069 TAAAATATTTTTCATCGGTAGTCAGTT---TATTCCAGTCATTGATATCTTTTGATATAT 47125
| ||||| ||| || | | || | | ||||| || | ||||| || |
Sbjct 271 TGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGT 212
Query 47126 CTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCAC 47185
||| ||||| || ||||| || | ||||| |||||||||| | ||| | |||
Sbjct 211 CTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGT 152
Query 47186 GATATTGGATCGGAAAAATAACAAATCTAT-TTGGATTTTTTGCAAGTATAGGTTCCATG 47244
| | ||| || |||||||| || |||| | || | ||| |||||| ||||| ||||||
Sbjct 151 GGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA-AATAGGCTCCATG 93
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712601308136640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |