Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1148 345 6e-90 seq28210 132 7e-26 >seq1148 Length=2189075 Score = 345 bits (382), Expect = 6e-90 Identities = 1206/1875 (64%), Gaps = 17/1875 (1%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || || || || | || || || ||||| || || ||||| || | || | || Sbjct 533097 TGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGAC 533156 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || ||||| || | || || ||||| || || || ||||| || |||| || | || Sbjct 533157 TCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 533216 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||||| | ||| || | ||| || || || || || |||| ||||| || | Sbjct 533217 TTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTG 533276 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 || | | ||| | || || || || || || ||||| || || || || Sbjct 533277 GGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTAC 533336 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 || ||||| | |||| || | || || ||||| || ||||| | ||| |||| || Sbjct 533337 GTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAG 533396 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 | || ||||| |||| |||| || |||||| || | || ||||| || | | Sbjct 533397 AGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGC 533456 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | ||||| || || || || || ||||| || || || ||||| || | || | | | Sbjct 533457 ATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATG 533516 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 ||||| | || || || | ||||| || || || || || || | ||||| || Sbjct 533517 TTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTC 533576 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TC 76258 |||| | ||||| ||| || || || || || || | | || | Sbjct 533577 TTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTG 533636 Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGG 76316 || |||| || || || | || ||||| || || ||||| ||||| | | || ||| Sbjct 533637 ACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGC--TGG 533694 Query 76317 CATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGT 76376 |||| | ||||||||||| || || || |||||||| || || || || || |||| Sbjct 533695 TGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 533754 Query 76377 TGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG 76436 ||||||| || |||| ||||| || || | |||| || || || || |||| | Sbjct 533755 TGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAG 533814 Query 76437 ATTCGATAATAGATTTCCAGACGACT-CTAG-CTTTTATTATAGATTTGTATCGCTTCTC 76494 | ||||| || | | ||| || || || | |||| | | ||| || ||| Sbjct 533815 ACTCGATGATGGCGTACCACAC--CTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTC 533872 Query 76495 TCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGG 76554 | ||||| |||| || || ||||| ||||| ||||| || |||| ||||| Sbjct 533873 CTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCCAGG 533932 Query 76555 ACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAG 76614 || ||||| |||||||| | ||||| || | || |||| ||||| || || Sbjct 533933 GCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACAG 533992 Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674 ||| || ||||| ||| | | || || || |||| | | || || || ||||| || Sbjct 533993 ATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTT 534052 Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 76734 ||| || || || ||||| || | || ||| | ||||| || || || || || || | Sbjct 534053 CTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAA 534112 Query 76735 AACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCT 76794 | || || || || || |||||||| || | || | || ||||| || || || | Sbjct 534113 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACG 534172 Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854 || ||| || | | |||||| || | ||||| || || | || || || ||| | Sbjct 534173 CAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGA 534232 Query 76855 ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCG 76914 ||| || || | | | ||| || || |||||| ||| ||||| || ||||| | Sbjct 534233 ACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTG 534292 Query 76915 TTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || | ||||| |||||||| || || || || ||| ||||| || || || ||||| Sbjct 534293 CTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCT 534352 Query 76975 AGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 |||| || | | || || || || || | || || || || || |||||||| Sbjct 534353 GGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCA 534412 Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCC 77094 | | || ||||| || ||||| || ||||| | || || | | || || || Sbjct 534413 TCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCC 534472 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154 || || || ||||||| ||| ||||| || || ||| | ||| || || || | Sbjct 534473 CACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAG 534532 Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 || || || |||| || || || ||||| | ||||| || ||||| | ||||| Sbjct 534533 CAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTA 534592 Query 77215 AATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA---TGACAGTGGT 77271 || || |||| || || |||||| | | ||||| |||| | | ||| Sbjct 534593 GATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGTCTCCTTGG- 534651 Query 77272 AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCAT 77331 | || || || || | | ||| || || || ||||| || | ||| ||||| Sbjct 534652 --AGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCAT 534709 Query 77332 TACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGC 77391 || ||||| || | || || || |||||||| || || || || || || | || || Sbjct 534710 GACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGC 534769 Query 77392 TAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGT 77451 | || |||||||| || || | || ||| ||||| || || || ||||| | || Sbjct 534770 CAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGT 534829 Query 77452 ATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTT 77511 ||| | || | || || || || | || || || || || || ||||||| || | Sbjct 534830 ATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTG 534889 Query 77512 GATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGAT 77571 || || || || || | ||| | ||||| || | || || || || ||||| Sbjct 534890 AGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGAT 534949 Query 77572 TTTATCAAACATGAC 77586 |||||| |||||||| Sbjct 534950 TTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 132 bits (146), Expect = 7e-26 Identities = 249/360 (69%), Gaps = 7/360 (2%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| || ||||| ||||| || | ||| ||| |||||||||||||||| || || Sbjct 450 ATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCAT 391 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTT 47008 || ||||| || || ||| | | ||||| | | || ||||| | |||||||| | Sbjct 390 GATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCT 332 Query 47009 CAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||| |||||| || ||||| || |||||| ||||| ||||| ||||| | ||| || | Sbjct 331 CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTA 272 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTT---TATTCCAGTCATTGATATCTTTTGATATAT 47125 | ||||| ||| || | | || | | ||||| || | ||||| || | Sbjct 271 TGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGT 212 Query 47126 CTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCAC 47185 ||| ||||| || ||||| || | ||||| |||||||||| | ||| | ||| Sbjct 211 CTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGT 152 Query 47186 GATATTGGATCGGAAAAATAACAAATCTAT-TTGGATTTTTTGCAAGTATAGGTTCCATG 47244 | | ||| || |||||||| || |||| | || | ||| |||||| ||||| |||||| Sbjct 151 GGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA-AATAGGCTCCATG 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712601308136640