Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq22170 93.3 7e-14 seq4331 86.0 1e-11 >seq22170 Length=289 Score = 93.3 bits (102), Expect = 7e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 5492 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGCCA 5551 ||||||||| |||||||||| ||||||||||||| |||||||| ||||| ||||| || Sbjct 83 TAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCGCTGGTTCAAGTCCAGCAG 142 Query 5552 GAGTCGCCACATTTTGCATTG 5572 ||| ||||||||||| |||| Sbjct 143 GAGGAGCCACATTTTG-ATTG 162 >seq4331 Length=202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 68 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCTCTGGTTCAAATCCAG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769947302847320