Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq19440 255 6e-63
seq14083 178 1e-39
seq18413 150 2e-31
seq28210 98.7 1e-15
seq10769 89.7 5e-13
>seq19440
Length=250
Score = 255 bits (282), Expect = 6e-63
Identities = 173/193 (90%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 8426 CCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATT 8485
|||||||||| ||| ||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 246 CCTGCCTCAGTCTCTTGAGTAGCGAGGACTACAGGCACCTGCCACCACGCCCAGCTAATT 187
Query 8486 TTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 8545
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 186 TTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTG 127
Query 8546 ACCTCATGTGAT-CCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCA 8604
|||||| |||| || |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 126 ACCTCAGCTGATCCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCA 67
Query 8605 CCGCGCCTGGCCC 8617
||||||| |||||
Sbjct 66 CCGCGCCCGGCCC 54
>seq14083
Length=229
Score = 178 bits (196), Expect = 1e-39
Identities = 177/229 (77%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 8353 GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGG 8412
|||||| ||||||||||| ||||| ||||| | |||||||||| |||| ||||| |||
Sbjct 229 GTTGCCTAGGCTGGAGTGTGGTGGCATGATCACAGCTCACTGCAGCCTCGACCTCCAGGG 170
Query 8413 TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA 8472
||||| || |||| ||||||||||| |||||||||||| ||||||| ||||| |
Sbjct 169 CTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACCACAGGCATGTGCCACTA 110
Query 8473 CGCCAAGCTAATTTTTGTA---TTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGC 8529
| | | ||||| | ||||| ||||| ||||| |||| ||||| ||||||
Sbjct 109 CACTTGGGTAATTAAAAAACATTTTTTTTAAGAGACAGGGTCTCACTATGTTTTCCAGGC 50
Query 8530 TGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAA 8578
|||||||||||||||| |||| |||||| ||||||| | |||| |||
Sbjct 49 TGGTCTCGAACTCCTGGGCTCAAGTGATCTGCCTGCCTTGACCTCTCAA 1
>seq18413
Length=243
Score = 150 bits (166), Expect = 2e-31
Identities = 100/110 (91%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404
||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||| ||
Sbjct 110 TCACTCTTGTTGCCCAGGCTGGAGTGCAATGGAGCGATCTCAGCTCACTGCAACCTCTGC 51
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGAT 8454
|||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 50 CTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAT 1
>seq28210
Length=470
Score = 98.7 bits (108), Expect = 1e-15
Identities = 216/320 (68%), Gaps = 9/320 (3%)
Strand=Plus/Minus
Query 23781 ATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAA 23840
||| |||||||| || | ||| |||| |||||||| || || || || |||||
Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382
Query 23841 CCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATT 23900
|||||| ||| | | ||||| || |||| || ||||| | ||| | | ||| |||||
Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAATTCTCAGCCAAATT 322
Query 23901 TTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 23960
|||||| || || |||||| ||||| || || || | || || ||||| |||| |
Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262
Query 23961 TTCATCA--GTTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 24017
||| ||| |||| | | |||||||| || ||||| || || | || ||
Sbjct 261 TTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTC 202
Query 24018 AACTGTCCAAAAACTTGCCAAGGCAC---GCTTATACATTAGCCAAATATCATTATGTTG 24074
| |||||||||| ||| ||| |||||| ||| | ||| | |||||
Sbjct 201 TGCCGTCCAAAAACAAGCC---TCACATTTTTTATACCACTCCCACAAATCGTGGTGTTG 145
Query 24075 TATTGGAAATATTACGAATC 24094
|| ||||| ||||||||||
Sbjct 144 AATGGGAAAAATTACGAATC 125
>seq10769
Length=223
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 23536 TCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATC 23595
||||| |||||| || || ||||| || ||||| ||||| ||||| |||||||| | |
Sbjct 223 TCCCTTGAAATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAAC 164
Query 23596 CAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACA 23655
|| || || | | ||| | || ||||||||||| ||||| ||||| ||||| || |
Sbjct 163 CAGAAAATAGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATC 104
Query 23656 AGACGTGTACCAAA 23669
|| ||| | ||||
Sbjct 103 AGGCGTTCAGCAAA 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521244354287800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |