Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq19440 255 6e-63 seq14083 178 1e-39 seq18413 150 2e-31 seq28210 98.7 1e-15 seq10769 89.7 5e-13 >seq19440 Length=250 Score = 255 bits (282), Expect = 6e-63 Identities = 173/193 (90%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 8426 CCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATT 8485 |||||||||| ||| ||||||| ||| |||||||| ||||||||||| |||||||| Sbjct 246 CCTGCCTCAGTCTCTTGAGTAGCGAGGACTACAGGCACCTGCCACCACGCCCAGCTAATT 187 Query 8486 TTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG 8545 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 186 TTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTG 127 Query 8546 ACCTCATGTGAT-CCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 |||||| |||| || |||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 126 ACCTCAGCTGATCCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCA 67 Query 8605 CCGCGCCTGGCCC 8617 ||||||| ||||| Sbjct 66 CCGCGCCCGGCCC 54 >seq14083 Length=229 Score = 178 bits (196), Expect = 1e-39 Identities = 177/229 (77%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 8353 GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGG 8412 |||||| ||||||||||| ||||| ||||| | |||||||||| |||| ||||| ||| Sbjct 229 GTTGCCTAGGCTGGAGTGTGGTGGCATGATCACAGCTCACTGCAGCCTCGACCTCCAGGG 170 Query 8413 TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA 8472 ||||| || |||| ||||||||||| |||||||||||| ||||||| ||||| | Sbjct 169 CTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACCACAGGCATGTGCCACTA 110 Query 8473 CGCCAAGCTAATTTTTGTA---TTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGC 8529 | | | ||||| | ||||| ||||| ||||| |||| ||||| |||||| Sbjct 109 CACTTGGGTAATTAAAAAACATTTTTTTTAAGAGACAGGGTCTCACTATGTTTTCCAGGC 50 Query 8530 TGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAA 8578 |||||||||||||||| |||| |||||| ||||||| | |||| ||| Sbjct 49 TGGTCTCGAACTCCTGGGCTCAAGTGATCTGCCTGCCTTGACCTCTCAA 1 >seq18413 Length=243 Score = 150 bits (166), Expect = 2e-31 Identities = 100/110 (91%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||| || Sbjct 110 TCACTCTTGTTGCCCAGGCTGGAGTGCAATGGAGCGATCTCAGCTCACTGCAACCTCTGC 51 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGAT 8454 |||| |||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 50 CTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAT 1 >seq28210 Length=470 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/320 (68%), Gaps = 9/320 (3%) Strand=Plus/Minus Query 23781 ATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAA 23840 ||| |||||||| || | ||| |||| |||||||| || || || || ||||| Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382 Query 23841 CCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATT 23900 |||||| ||| | | ||||| || |||| || ||||| | ||| | | ||| ||||| Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAATTCTCAGCCAAATT 322 Query 23901 TTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 23960 |||||| || || |||||| ||||| || || || | || || ||||| |||| | Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262 Query 23961 TTCATCA--GTTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 24017 ||| ||| |||| | | |||||||| || ||||| || || | || || Sbjct 261 TTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTC 202 Query 24018 AACTGTCCAAAAACTTGCCAAGGCAC---GCTTATACATTAGCCAAATATCATTATGTTG 24074 | |||||||||| ||| ||| |||||| ||| | ||| | ||||| Sbjct 201 TGCCGTCCAAAAACAAGCC---TCACATTTTTTATACCACTCCCACAAATCGTGGTGTTG 145 Query 24075 TATTGGAAATATTACGAATC 24094 || ||||| |||||||||| Sbjct 144 AATGGGAAAAATTACGAATC 125 >seq10769 Length=223 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23536 TCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATC 23595 ||||| |||||| || || ||||| || ||||| ||||| ||||| |||||||| | | Sbjct 223 TCCCTTGAAATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAAC 164 Query 23596 CAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACA 23655 || || || | | ||| | || ||||||||||| ||||| ||||| ||||| || | Sbjct 163 CAGAAAATAGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATC 104 Query 23656 AGACGTGTACCAAA 23669 || ||| | |||| Sbjct 103 AGGCGTTCAGCAAA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521244354287800