Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1473 127 1e-24 >seq1473 Length=2736273 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | || || || || || ||| ||| || ||||||||||| || Sbjct 1452464 CATTCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 1452405 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || |||| ||| || || ||||||||||| | |||||||| | Sbjct 1452404 AGAGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGG 1452345 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||||||| ||| || || |||| || ||| | | ||||| | || Sbjct 1452344 AGGAATACCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAACAGTGTCACTGCCTT 1452286 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || ||||||||||| ||||||||||| Sbjct 1452285 CAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || || || || ||| |||||||||||||||||| || | Sbjct 2588184 CCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAC 2588125 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || || || ||||| || ||||||||||| | |||||| |||| || Sbjct 2588124 AGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2588065 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| || || |||| | ||| | |||||||| || ||| || Sbjct 2588064 ATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAAC 2588006 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || || ||||| || ||||| |||||||||||||| |||||| Sbjct 2588005 CTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCATG 2587957 Score = 123 bits (136), Expect = 2e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 44103 ATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 ||| || || || || || | || || || || || ||| |||||| |||||||||| Sbjct 2590167 ATTACAGGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 2590226 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | || | ||| ||| |||| ||||||||||| || ||||||||||| | |||||| | Sbjct 2590227 AGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGT 2590286 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| ||| || || |||| | ||| | || ||||| | Sbjct 2590287 CAGGTGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTG 2590345 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| | || || ||||| || |||||||||||||| ||||| |||||| Sbjct 2590346 GGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2590402 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||| ||||||||||| || Sbjct 2587732 CATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 2587673 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || ||||| ||||| | |||||| |||| Sbjct 2587672 TGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGG 2587613 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| || || |||| | ||| | || ||||| || | Sbjct 2587612 GGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCT 2587554 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||||||||| ||||| |||||| Sbjct 2587553 CAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2587501 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || || |||||| ||||||||||| || Sbjct 2587960 CATGCCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 2587901 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || || ||||| || ||||||||||| | |||||| |||| Sbjct 2587900 TGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGG 2587841 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| || || |||| | ||| | |||||||| || || Sbjct 2587840 GGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGTT 2587782 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||||||||||||||| |||||| Sbjct 2587781 CAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 2587729 Score = 105 bits (116), Expect = 5e-18 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | ||| || || || || ||| |||||| |||||||| Sbjct 1453610 TATTTGCATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTT 1453551 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | ||| ||| | || || || || || || ||||| ||||| | ||| || Sbjct 1453550 GTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTG 1453491 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGG 44279 || | ||| | ||||| || ||| || || ||||| || |||| | ||||| Sbjct 1453490 GTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCC-ACAGTGTCAC 1453432 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| | || || || || || |||||||||||||| || ||||||||| Sbjct 1453431 TGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || || || || || ||| ||| || ||||||||||| || Sbjct 1452920 CATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 1452861 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||| || || || ||||| ||||| | |||||| || | Sbjct 1452860 AGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGG 1452801 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || ||| || ||| ||| | || | | ||||| | || Sbjct 1452800 AGGAATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTC 1452741 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || || || || |||||||||||||| ||||| |||||| Sbjct 1452740 AACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | || || || |||||||| ||||||||||||||||||||| Sbjct 1454972 CATGCCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATC 1454913 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || |||||||| || |||||||||| | || || || | Sbjct 1454912 AGAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGG 1454853 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| ||| || || ||| | | | | || || || ||| Sbjct 1454852 GGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTC 1454793 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || |||||||||||||| || | |||||| Sbjct 1454792 AACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCATG 1454741 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | || || || ||||| || ||| |||||||||||||| || Sbjct 1454288 CATGCCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTC 1454229 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || || | ||||| || ||||||||||| | ||||||||| | Sbjct 1454228 AGATAAGGTGCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG 1454169 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | | ||||| | || Sbjct 1454168 GGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTC 1454109 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || ||||||||||| || ||||| |||||| Sbjct 1454108 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATG 1454057 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGT-GCTCTCCTTTTGGATGTTGTAAT 44165 ||| || ||||||| | || || || ||||| || ||| ||||||||||||||||| | Sbjct 1454744 CATGCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGT 1454686 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | ||| ||| || ||||||| || || |||||||||| | ||| |||| | Sbjct 1454685 CAGAGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAG 1454626 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | ||||||||| || | || || |||| | ||| | | || || | Sbjct 1454625 GCGGAATACCTTCCTTGTCTTTGAT-TTTGGCTTTGACATTCTCAACAGTATCACTGCCC 1454567 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || || ||||| ||||| ||||| |||||| Sbjct 1454566 TCGACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | ||| || || || || ||| |||||| ||||||||||| || Sbjct 1453148 CATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1453089 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||| || || || ||||| ||||| | ||| || || | Sbjct 1453088 AGAGAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGG 1453029 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || ||| || || ||||| | | | ||||| || Sbjct 1453028 AGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTC 1452969 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || | ||||| || || |||||||| || ||||| |||||| Sbjct 1452968 AACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1452917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || || |||| || ||| |||||| |||||||||||||| Sbjct 1454516 CATGCCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC 1454457 Query 44167 GGCGAG---TTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | ||| |||| || || ||||| |||| |||||||| ||||| | |||||| || Sbjct 1454456 AGAGAGGGTTTGG---TCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTC 1454400 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || || || || | | ||| | | ||||| | Sbjct 1454399 TGGGGGAATGCCTTCCTTGTCTTGGAT-TTGGGCCTTGACATTCTCAACAGTGTCACTAG 1454341 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || | | ||| || || ||||||||||| || || |||||| Sbjct 1454340 TCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCATG 1454285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359826412785609