Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq822 156 6e-33 seq782 129 8e-25 seq1113 89.7 7e-13 >seq822 Length=457018 Score = 156 bits (172), Expect = 6e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||||||| |||| |||||| || ||||| |||||||||||||||||| | |||||| Sbjct 363671 TTGACGATGTCGAAGCCCACGCGGCCCCCGAAAGTGCTGGGCTTCCAGTACTCGGGGGAG 363612 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| ||| ||||||||||||||||||||| || |||| ||| | |||||| Sbjct 363611 CAGATGGGGTTGCCCAGGAGGCCTTTGAGGGAGAACGGCGCACCCATCTCCACCATGCTC 363552 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || |||||||||||| |||| | | | |||| || | |||| ||| | || | | Sbjct 363551 TCGCCGAAGATGGCGCCCAGACGAGTCCTCTCCAGCAGCATGCCGGGGTAAAATTCAAGA 363492 Query 8531 GCCTCGACGTCTCCGTAAA 8549 || || | ||| ||||||| Sbjct 363491 GCGTCAATGTCGCCGTAAA 363473 >seq782 Length=5188642 Score = 129 bits (142), Expect = 8e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 |||||||| | ||||| || ||| |||||| ||| | ||||| |||| |||| Sbjct 4107976 ATGAGTCGCGAAGTCTGAAAGAGTCTTTCGTCATCCCAATAAGGATGGACTTGCTTCAAG 4108035 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 |||| |||||| | |||||||||| |||||| || ||||| ||||||||||| ||||| Sbjct 4108036 ACATTGCACACTCGATTGTGTTCCCGGAGCCAAATGGTGGCATACATCATGAGACCAGGG 4108095 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||||||||||||||| || || ||||| Sbjct 4108096 ACCAGGCCAAAAGCCTCATGGCCCACAGC 4108124 Score = 118 bits (130), Expect = 2e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||||||||||||||| | || ||||||||| ||| |||| | |||| Sbjct 4106323 CCTCCAAACGTGCTGGGCTTCCAGTATTCTGGAGAGCAGATGGGGTTTCCCATCAAGCCT 4106382 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||| ||||| || || |||| ||| | ||| |||| || |||||||| ||||| | | Sbjct 4106383 TTGAGTGAGAAAGGGGCTCCCATCTCCACCATGGTCTCCCCAAAGATGGCATTGGGTCTG 4106442 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 || |||||||| | | || | ||| ||||| || || || | ||||| || Sbjct 4106443 GGTTTTTCCACAAGTAGGCCTGGGTAGAGCTCTACGGCATCAATATCTCCATA 4106495 >seq1113 Length=2919733 Score = 89.7 bits (98), Expect = 7e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||||| || || ||||||||||| |||||||||||| | || ||||| | || Sbjct 1000857 CGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCGGGTGAGCACAAAGGGT 1000798 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| | ||| || || ||||| || || |||| || | ||||| || || |||| Sbjct 1000797 TGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTCTACCATGCTTTCTCCAAAGA 1000738 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| ||||| |||||||||| | || || | || | |||| || |||| || Sbjct 1000737 TGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATAGAATTCCAAGGCGTCGATGT 1000678 Query 8541 CTCCGTA 8547 ||||| Sbjct 1000677 GGCCGTA 1000671 Score = 89.7 bits (98), Expect = 7e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||||| || || ||||||||||| |||||||||||| | || ||||| | || Sbjct 1003592 CGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCGGGTGAGCACAAAGGGT 1003533 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| | ||| || || ||||| || || |||| || | ||||| || || |||| Sbjct 1003532 TGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTCTACCATGCTTTCTCCAAAGA 1003473 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| ||||| |||||||||| | || || | || | |||| || |||| || Sbjct 1003472 TGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATAGAATTCCAAGGCGTCGATGT 1003413 Query 8541 CTCCGTA 8547 ||||| Sbjct 1003412 GGCCGTA 1003406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716541866198080