Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq822 156 6e-33
seq782 129 8e-25
seq1113 89.7 7e-13
>seq822
Length=457018
Score = 156 bits (172), Expect = 6e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410
|||||||| |||| |||||| || ||||| |||||||||||||||||| | ||||||
Sbjct 363671 TTGACGATGTCGAAGCCCACGCGGCCCCCGAAAGTGCTGGGCTTCCAGTACTCGGGGGAG 363612
Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470
|||||| ||| ||| ||||||||||||||||||||| || |||| ||| | ||||||
Sbjct 363611 CAGATGGGGTTGCCCAGGAGGCCTTTGAGGGAGAACGGCGCACCCATCTCCACCATGCTC 363552
Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530
|| |||||||||||| |||| | | | |||| || | |||| ||| | || | |
Sbjct 363551 TCGCCGAAGATGGCGCCCAGACGAGTCCTCTCCAGCAGCATGCCGGGGTAAAATTCAAGA 363492
Query 8531 GCCTCGACGTCTCCGTAAA 8549
|| || | ||| |||||||
Sbjct 363491 GCGTCAATGTCGCCGTAAA 363473
>seq782
Length=5188642
Score = 129 bits (142), Expect = 8e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
|||||||| | ||||| || ||| |||||| ||| | ||||| |||| ||||
Sbjct 4107976 ATGAGTCGCGAAGTCTGAAAGAGTCTTTCGTCATCCCAATAAGGATGGACTTGCTTCAAG 4108035
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
|||| |||||| | |||||||||| |||||| || ||||| ||||||||||| |||||
Sbjct 4108036 ACATTGCACACTCGATTGTGTTCCCGGAGCCAAATGGTGGCATACATCATGAGACCAGGG 4108095
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9392
||||||||||||||||| || || |||||
Sbjct 4108096 ACCAGGCCAAAAGCCTCATGGCCCACAGC 4108124
Score = 118 bits (130), Expect = 2e-21
Identities = 130/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434
|| || || ||||||||||||||||| | || ||||||||| ||| |||| | ||||
Sbjct 4106323 CCTCCAAACGTGCTGGGCTTCCAGTATTCTGGAGAGCAGATGGGGTTTCCCATCAAGCCT 4106382
Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494
||||| ||||| || || |||| ||| | ||| |||| || |||||||| ||||| | |
Sbjct 4106383 TTGAGTGAGAAAGGGGCTCCCATCTCCACCATGGTCTCCCCAAAGATGGCATTGGGTCTG 4106442
Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547
|| |||||||| | | || | ||| ||||| || || || | ||||| ||
Sbjct 4106443 GGTTTTTCCACAAGTAGGCCTGGGTAGAGCTCTACGGCATCAATATCTCCATA 4106495
>seq1113
Length=2919733
Score = 89.7 bits (98), Expect = 7e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420
|||| ||||| || || ||||||||||| |||||||||||| | || ||||| | ||
Sbjct 1000857 CGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCGGGTGAGCACAAAGGGT 1000798
Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480
| ||| | ||| || || ||||| || || |||| || | ||||| || || ||||
Sbjct 1000797 TGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTCTACCATGCTTTCTCCAAAGA 1000738
Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540
||| ||||| |||||||||| | || || | || | |||| || |||| ||
Sbjct 1000737 TGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATAGAATTCCAAGGCGTCGATGT 1000678
Query 8541 CTCCGTA 8547
|||||
Sbjct 1000677 GGCCGTA 1000671
Score = 89.7 bits (98), Expect = 7e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420
|||| ||||| || || ||||||||||| |||||||||||| | || ||||| | ||
Sbjct 1003592 CGAAGCCCACCTCCCCCCCGAAGGTGCTCGGCTTCCAGTACTCGGGTGAGCACAAAGGGT 1003533
Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480
| ||| | ||| || || ||||| || || |||| || | ||||| || || ||||
Sbjct 1003532 TGCCCAGCAAGCCCTTCAGCGAGAAGGGGGCGCCCATTTCTACCATGCTTTCTCCAAAGA 1003473
Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540
||| ||||| |||||||||| | || || | || | |||| || |||| ||
Sbjct 1003472 TGGACCCAGGACGCGGCTTTTCCAGAAGGATACCCGGATAGAATTCCAAGGCGTCGATGT 1003413
Query 8541 CTCCGTA 8547
|||||
Sbjct 1003412 GGCCGTA 1003406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716541866198080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |