Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 136 1e-26
>seq1473
Length=2736273
Score = 136 bits (150), Expect = 1e-26
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || || ||||| ||||| ||| | |||
Sbjct 2587733 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATAACCCTTGAGGTTGAACCCAGTGAC 2587792
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| |||||| || || |||||||| ||||| || || || ||||||||
Sbjct 2587793 ACCATCGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 2587852
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| || || || || || |||||||| | || || | || || ||| ||
Sbjct 2587853 AGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGTACACTATCAGACTACAACATC 2587912
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|| || || ||||| || |||||||| || | |||||
Sbjct 2587913 CAGAAGGAGTCAACTCTCCATCTTGTCCTGCGTCTCAG 2587950
Score = 131 bits (144), Expect = 4e-25
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || ||||| || || || |||||||||||||| | ||| || |
Sbjct 2590398 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 2590341
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || ||||| |||||| || || |||||||| ||||| || || || |||||||
Sbjct 2590340 ACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAGC 2590281
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || || ||||| ||||| || | ||||| | || || |||
Sbjct 2590280 AGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACTCTCTCTGACTACAACA 2590221
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| || || || || || |||||||| || | |||||
Sbjct 2590220 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 2590181
Score = 125 bits (138), Expect = 2e-23
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || ||||| || || || |||||||||||||| | ||| || |
Sbjct 2587505 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 2587562
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || ||||| |||||| || || |||||||| ||||| || || || |||||||
Sbjct 2587563 ACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 2587622
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | || || || || || ||||| |||||||| | || || | || || |||
Sbjct 2587623 AGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACGCTCTCAGACTACAACA 2587682
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| || || || || || |||||||| || | |||||
Sbjct 2587683 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 2587722
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || ||||| || ||||| |||||||| ||||| || | |||
Sbjct 1452693 CAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGTGAC 1452752
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || ||||| || ||||||||||||||||| || ||||| ||||||||
Sbjct 1452753 ACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAGCAG 1452812
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| || |||||||| | || || | || || ||| ||
Sbjct 1452813 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTACAACATC 1452872
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || || || ||||||||
Sbjct 1452873 CAGAAAGAGTCCACCCTCCATCTTGT 1452898
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||| || ||||| || ||||| |||||||| ||||| || | |||
Sbjct 1453377 CAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGTGAC 1453436
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || || || ||||||||||||||||| || ||||| ||||| ||
Sbjct 1453437 ACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453496
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| ||||||||||| | || || | || || ||| ||
Sbjct 1453497 AGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAACATC 1453556
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || || |||||||| |||
Sbjct 1453557 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453586
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||| || || || || || || |||| || ||||| || | ||
Sbjct 1453605 CAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGTGAT 1453664
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | |||||||| || || ||||||||||||||||| || ||||| ||||| ||
Sbjct 1453665 ACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453724
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| || ||||||||| |||| || | || || ||| ||
Sbjct 1453725 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAACATC 1453784
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||||||
Sbjct 1453785 CAGAAGGAGTCCACCCTCCATCTTGT 1453810
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||| || || || || || || ||||| || ||||| || | |||
Sbjct 1454973 CAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGTGAC 1455032
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | ||||| || ||| || || |||||||| |||||||| || || || || ||
Sbjct 1455033 ACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAG 1455092
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| | |||||||| | || || | ||||| ||| ||
Sbjct 1455093 AGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAACATC 1455152
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||||||||| || ||||||||
Sbjct 1455153 CAGAAAGAATCAACCCTCCATCTTGT 1455178
Score = 91.5 bits (100), Expect = 4e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || || |||| || ||||| || | |||
Sbjct 1453149 CAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGTGAC 1453208
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | ||||| || || || || |||||||||||||| || ||||| ||||| ||
Sbjct 1453209 ACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453268
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| || |||||||| | || || |||| || ||| |
Sbjct 1453269 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAACATT 1453328
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || || |||||||| |||
Sbjct 1453329 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453358
Score = 86.0 bits (94), Expect = 2e-11
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || || |||| || ||||| || | |||
Sbjct 1452921 CAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGTGAC 1452980
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | ||||| || || || || |||||||||||||| || ||||| ||||| ||
Sbjct 1452981 ACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453040
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || || || || ||||| || |||||||| | | || | || || ||| ||
Sbjct 1453041 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAACATC 1453100
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || || |||||||| |||
Sbjct 1453101 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203154741780138
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |