Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1473 136 1e-26 >seq1473 Length=2736273 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || || ||||| ||||| ||| | ||| Sbjct 2587733 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATAACCCTTGAGGTTGAACCCAGTGAC 2587792 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || |||||||| ||||| || || || |||||||| Sbjct 2587793 ACCATCGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 2587852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || || || |||||||| | || || | || || ||| || Sbjct 2587853 AGGTTGATCTTTGCTGGCAAGCAACTAGAAGATGGCCGTACACTATCAGACTACAACATC 2587912 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || || ||||| || |||||||| || | ||||| Sbjct 2587913 CAGAAGGAGTCAACTCTCCATCTTGTCCTGCGTCTCAG 2587950 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || ||||| || || || |||||||||||||| | ||| || | Sbjct 2590398 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 2590341 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| || || |||||||| ||||| || || || ||||||| Sbjct 2590340 ACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCACCTGACCAGC 2590281 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| ||||| || | ||||| | || || ||| Sbjct 2590280 AGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACTCTCTCTGACTACAACA 2590221 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || |||||||| || | ||||| Sbjct 2590220 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 2590181 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || ||||| || || || |||||||||||||| | ||| || | Sbjct 2587505 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 2587562 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| || || |||||||| ||||| || || || ||||||| Sbjct 2587563 ACACTATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 2587622 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || || ||||| |||||||| | || || | || || ||| Sbjct 2587623 AGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACGCTCTCAGACTACAACA 2587682 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || |||||||| || | ||||| Sbjct 2587683 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 2587722 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| |||||||| ||||| || | ||| Sbjct 1452693 CAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGTGAC 1452752 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || ||||| || ||||||||||||||||| || ||||| |||||||| Sbjct 1452753 ACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAGCAG 1452812 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| || |||||||| | || || | || || ||| || Sbjct 1452813 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTACAACATC 1452872 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || |||||||| Sbjct 1452873 CAGAAAGAGTCCACCCTCCATCTTGT 1452898 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || ||||| |||||||| ||||| || | ||| Sbjct 1453377 CAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGTGAC 1453436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || || ||||||||||||||||| || ||||| ||||| || Sbjct 1453437 ACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453496 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| ||||||||||| | || || | || || ||| || Sbjct 1453497 AGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAACATC 1453556 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || |||||||| ||| Sbjct 1453557 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453586 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || || || || || |||| || ||||| || | || Sbjct 1453605 CAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGTGAT 1453664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | |||||||| || || ||||||||||||||||| || ||||| ||||| || Sbjct 1453665 ACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| || ||||||||| |||| || | || || ||| || Sbjct 1453725 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAACATC 1453784 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 1453785 CAGAAGGAGTCCACCCTCCATCTTGT 1453810 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || ||||| || ||||| || | ||| Sbjct 1454973 CAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGTGAC 1455032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | ||||| || ||| || || |||||||| |||||||| || || || || || Sbjct 1455033 ACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAG 1455092 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| | |||||||| | || || | ||||| ||| || Sbjct 1455093 AGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAACATC 1455152 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||||||||| || |||||||| Sbjct 1455153 CAGAAAGAATCAACCCTCCATCTTGT 1455178 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||| || ||||| || | ||| Sbjct 1453149 CAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGTGAC 1453208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | ||||| || || || || |||||||||||||| || ||||| ||||| || Sbjct 1453209 ACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453268 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| || |||||||| | || || |||| || ||| | Sbjct 1453269 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAACATT 1453328 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || |||||||| ||| Sbjct 1453329 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453358 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||| || ||||| || | ||| Sbjct 1452921 CAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGTGAC 1452980 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | ||||| || || || || |||||||||||||| || ||||| ||||| || Sbjct 1452981 ACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAACAG 1453040 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || ||||| || |||||||| | | || | || || ||| || Sbjct 1453041 AGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAACATC 1453100 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || |||||||| ||| Sbjct 1453101 CAGAAGGAGTCCACCCTCCATCTTGTCTTG 1453130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203154741780138