Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1473 143 2e-29 >seq1473 Length=2736273 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || || ||||| || ||| ||||||||||||||| |||||||| Sbjct 1453373 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1453314 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || || || ||||| || ||||||| | ||||||||| | || Sbjct 1453313 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453254 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || || |||||| |||||| ||||| | || ||||| ||| ||| || Sbjct 1453253 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1453194 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || | || || || || || |||||||| || ||||||||| Sbjct 1453193 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || || ||||| || ||| ||||||||| ||||| ||||| || Sbjct 1453601 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453542 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || ||||| || ||||| || ||||||| | ||||||||| | || Sbjct 1453541 GAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453482 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || || |||||| ||||| ||||| ||||||||| || ||| || Sbjct 1453481 AATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAAC 1453422 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || ||||| || || || ||||| || || || |||||| Sbjct 1453421 CTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || || ||||| || ||| ||||||||| ||||| ||||| || Sbjct 1452689 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1452630 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || | || ||||| |||||||||| | ||||||||| | || Sbjct 1452629 GAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGG 1452570 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||| | |||||| ||||| | ||||| || ||| ||| || Sbjct 1452569 AATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAAC 1452510 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || | || || || || || |||||||| || |||||||| Sbjct 1452509 CTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452462 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||| ||||| ||||| Sbjct 2587719 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGG 2587660 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| | ||| ||||| | ||||| || ||| Sbjct 2587659 CCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 2587600 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| |||||| |||| || || |||||| || | ||| ||||| | || Sbjct 2587599 TTGTCCTGGATTTTG-GCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGT 2587541 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || || ||||||||||| Sbjct 2587540 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||| ||||| ||||| Sbjct 2590184 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 2590243 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || |||| | ||| ||||| | |||| || ||| Sbjct 2590244 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCC 2590303 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| |||||| |||| || || |||||| || | ||| ||||| | || Sbjct 2590304 TTGTCCTGGATTTTG-GCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGT 2590362 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || || ||||||||||| Sbjct 2590363 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| ||| ||||| ||||| ||||| || Sbjct 1452917 GCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1452858 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || || || ||||| || ||||||| | ||| ||||| | || Sbjct 1452857 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGG 1452798 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || |||||| ||| |||| | | || | |||||||| || ||| | Sbjct 1452797 AATGCCTTCTTTGTCC-TGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAA 1452739 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || ||||| || || || ||||| || || ||||||||| Sbjct 1452738 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || || ||||| ||||| || || ||| Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | || ||||| || ||||||| | |||||| || | |||| Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| |||||| |||| | || ||||| || ||| ||| Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || ||||| || || ||||| || |||||||||||| Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||| ||||| ||||| ||||| ||||||||||| Sbjct 1452451 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1452392 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| ||||| || || |||| | || || || | |||| | ||| Sbjct 1452391 CCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCC 1452332 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || |||| |||| ||| | |||||||| || || ||||| | || Sbjct 1452331 TTGTCC-TGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGT 1452273 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || || || ||||| || Sbjct 1452272 GATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462088005792400