Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 143 2e-29
>seq1473
Length=2736273
Score = 143 bits (158), Expect = 2e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| || || ||||| || ||| ||||||||||||||| ||||||||
Sbjct 1453373 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1453314
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || || || ||||| || ||||||| | ||||||||| | ||
Sbjct 1453313 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453254
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || || |||||| |||||| ||||| | || ||||| ||| ||| ||
Sbjct 1453253 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1453194
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || | || || || || || |||||||| || |||||||||
Sbjct 1453193 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| || || ||||| || ||| ||||||||| ||||| ||||| ||
Sbjct 1453601 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453542
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || ||||| || ||||| || ||||||| | ||||||||| | ||
Sbjct 1453541 GAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453482
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || || |||||| ||||| ||||| ||||||||| || ||| ||
Sbjct 1453481 AATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAAC 1453422
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || ||||| || || || ||||| || || || ||||||
Sbjct 1453421 CTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| || || ||||| || ||| ||||||||| ||||| ||||| ||
Sbjct 1452689 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1452630
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || | || ||||| |||||||||| | ||||||||| | ||
Sbjct 1452629 GAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGG 1452570
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||||||| | |||||| ||||| | ||||| || ||| ||| ||
Sbjct 1452569 AATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAAC 1452510
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || | || || || || || |||||||| || ||||||||
Sbjct 1452509 CTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452462
Score = 123 bits (136), Expect = 2e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||||||||| ||||| ||||| ||||| |||||
Sbjct 2587719 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGG 2587660
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| || || || |||| | ||| ||||| | ||||| || |||
Sbjct 2587659 CCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 2587600
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| |||||| |||| || || |||||| || | ||| ||||| | ||
Sbjct 2587599 TTGTCCTGGATTTTG-GCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGT 2587541
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || ||||| || || |||||||||||
Sbjct 2587540 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499
Score = 123 bits (136), Expect = 2e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||||||||| ||||| ||||| ||||| |||||
Sbjct 2590184 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 2590243
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| || || || |||| | ||| ||||| | |||| || |||
Sbjct 2590244 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCC 2590303
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| |||||| |||| || || |||||| || | ||| ||||| | ||
Sbjct 2590304 TTGTCCTGGATTTTG-GCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGT 2590362
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || ||||| || || |||||||||||
Sbjct 2590363 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | || ||||| || ||| ||| ||||| ||||| ||||| ||
Sbjct 1452917 GCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1452858
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || || || ||||| || ||||||| | ||| ||||| | ||
Sbjct 1452857 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGG 1452798
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || || |||||| ||| |||| | | || | |||||||| || ||| |
Sbjct 1452797 AATGCCTTCTTTGTCC-TGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAA 1452739
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || ||||| || || || ||||| || || |||||||||
Sbjct 1452738 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || || ||||| ||||| || || |||
Sbjct 1455196 CCACCTCGCAGACGCAGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAG 1455137
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | || ||||| || ||||||| | |||||| || | ||||
Sbjct 1455136 AGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGA 1455077
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| |||||| |||| | || ||||| || ||| |||
Sbjct 1455076 ATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACC 1455017
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| | || || || ||||| || || ||||| || ||||||||||||
Sbjct 1455016 TCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACAAAAATCTGCATG 1454969
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||| ||||| ||||| ||||| |||||||||||
Sbjct 1452451 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1452392
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || | ||| ||||| || || |||| | || || || | |||| | |||
Sbjct 1452391 CCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCC 1452332
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| || |||| |||| ||| | |||||||| || || ||||| | ||
Sbjct 1452331 TTGTCC-TGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGT 1452273
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || ||||| || || || ||||| ||
Sbjct 1452272 GATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462088005792400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |