Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 1e-14 seq18 91.5 2e-13 seq24 87.8 2e-12 >seq25 Length=19457651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || || ||||| ||||| |||||||| | ||||||||||||| Sbjct 18107897 ACCTCTTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTATACATCTGCCAGATGTCATGA 18107838 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || |||||||| || || ||||| | | |||||||| Sbjct 18107837 TACTGAATTGGGAAGATGACAAAGCGACGTGGATTTT 18107801 >seq18 Length=24512808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || ||||| ||| | || || || || ||||| | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||| ||||| |||||||||||||| || |||| | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCATCTTAATGACCACTT 14415842 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 53045 | |||| ||| ||||| | || ||||| ||||| ||| | || | ||||| Sbjct 14415843 TCTGTGAAATCTCCCATACTGTCTTATACAACTC-CTTTACGTCGTTTGGAA 14415893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| |||||||||| || | || ||||| || |||||||| || || || | Sbjct 14425535 ACCTGAAACTCTCCAGACAGCACGCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 14425594 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 ||||||||||| |||| ||| || || || || ||||| ||||| || |||| Sbjct 14425595 GACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATGGGAGCCA 14425646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 |||| ||||| ||||||||||| ||||| ||||| || || || |||| ||| || Sbjct 14429329 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTGC 14429388 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || || || ||||| || | || ||||| | | || ||| | ||||| ||| Sbjct 14429389 TCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGGT 14429448 Query 54149 TCCAAGTATATGGTCATAACTCCAGG 54174 |||||||| || | | | ||||||| Sbjct 14429449 TCCAAGTACATCGCAAAAGCTCCAGG 14429474 >seq24 Length=19702765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || ||||| | |||||||| ||||| | || | || | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| ||||||||||| || || || || ||||| ||||||||||| | Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 24277 C 24277 | Sbjct 12661767 C 12661767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652275581680