Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 seq11 84.2 3e-11 >seq21 Length=20987006 Score = 107 bits (118), Expect = 2e-18 Identities = 181/258 (70%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| |||||||| | |||||| ||| |||| |||| || Sbjct 2087448 GAACTTCTCAAAGTTCCAGGAGACGTCGTTCCTGCACACGGGACTCCAGATGATGAACTT 2087507 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 ||||||| ||| | | | || |||||| || || || | |||| | || Sbjct 2087508 GGGGTCGGTCATCAAGGCCGTAGGGTTGTCGCTGGGGAAGGGAAG--CTTCTCCTTGAGA 2087565 Query 83261 AAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 || |||| || || || || |||||| |||| || || ||| | | ||| | Sbjct 2087566 AACACGAACAGGGGGTGCGCATCCTTGC--CGTTCACGTCAATCTTTTGCAGTAGCTGGA 2087623 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 ||| ||||||||||||||||||||||| |||| ||||| ||| || ||| || | | Sbjct 2087624 AGTGAGGCTCGAAGCCGTTCCCAGGACGTACGTACTTCAAGGAGTTCAGGATTTCTTCGT 2087683 Query 83379 TCTGGGCGTTTTCCTGGT 83396 ||| | ||||||||| || Sbjct 2087684 TCTTGTCGTTTTCCTTGT 2087701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/144 (76%), Gaps = 12/144 (8%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCC-----CGAG 83441 || |||| || ||||||||||| || |||| | || ||||| || |||||| |||| Sbjct 2088307 TTACCTGATGGCCGAACTGGTTGCA-GGGAGCTCCCAGCACAACAAGCCCCTTCTCCGAG 2088365 Query 83442 CTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGA 83501 | | || | || |||||||||||||||||||| |||| |||||| | ||||||| Sbjct 2088366 -TATTTGGAG----TGGAGCTCGTTCATCTGAGTGTAGTCCCTGACCGTCGTGCCTCAGA 2088420 Query 83502 GGGACGCTACGTTCTCGATGAGCA 83525 | ||||| |||||||||| |||| Sbjct 2088421 GAGACGCCACGTTCTCGACCAGCA 2088444 >seq11 Length=28208075 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||| || || |||||||| || || | ||| || | || || ||| || | Sbjct 15523445 GTTTACCTGATGGCCAAACTGGTTGCAGGGCACCCCCAGAATGACGAGTCCCTCCGCGGC 15523386 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | |||| || |||||||||||||| ||||| |||| | || | |||||||| || Sbjct 15523385 GAAGCGCTCATGGAGCTCGTTCATCTGGGTGTAATCCCTGGTGGTCGTGCCTCAGAGAGA 15523326 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 ||| ||||||||||| || | ||| ||| |||| Sbjct 15523325 CGCAACGTTCTCGATCAGGACTACCTTACCCTGTAA 15523290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608725715363640