Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq28 120 3e-22 >seq28 Length=18419168 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || || || ||||| | |||||| || | || Sbjct 12497849 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497908 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 12497909 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497968 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| || | ||| |||||| Sbjct 12497969 TGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 12498028 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | ||||| ||||| || ||||||||| Sbjct 12498029 TTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTTG 12498064 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || || || ||||| | |||||| || | || Sbjct 12497393 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497452 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 12497453 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497512 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| || | ||| |||||| Sbjct 12497513 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 12497572 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||| ||||| || ||||| Sbjct 12497573 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| || || || ||||| | |||||| || | || Sbjct 12497621 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497680 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 12497681 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497740 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| || | ||| |||||| Sbjct 12497741 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 12497800 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||| ||||| || ||||| Sbjct 12497801 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| |||| || | ||||||||||| || || || ||||| | Sbjct 12497072 TCCACCCCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 12497131 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 12497132 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12497191 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||| ||||| ||| || || || | | | || |||| |||||| Sbjct 12497192 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 12497251 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 || | || ||||||||||| || | ||||| ||||| || || Sbjct 12497252 CTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422211128561156