Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 4e-15 seq12 96.9 4e-15 seq25 93.3 5e-14 seq3933 89.7 6e-13 seq5292 86.0 7e-12 seq4998 86.0 7e-12 seq3790 86.0 7e-12 seq13 82.4 9e-11 >seq20 Length=22470590 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/98 (83%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| || Sbjct 20570424 TTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 20570365 Query 60122 ACTATACTACCGAGGATTGAATATATA-ACTTGAATAT 60158 ||||||||| |||||| ||| || | | |||| || || Sbjct 20570364 ACTATACTAACGAGGACTGAGTACAAAGACTTCAAAAT 20570327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||| || ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 20571953 AAACTTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 20571894 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 20571893 GTCCACTATACTAACGAGGA 20571874 >seq12 Length=28145556 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| || Sbjct 8969134 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 8969075 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 8969074 ACTATACTAACGAGGA 8969059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8967303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8967362 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8967363 ATACTAACGAGGA 8967375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8970109 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8970050 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8970049 ATACTAACGAGGA 8970037 >seq25 Length=19457651 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 5549967 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 5550026 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 5550027 TATACTAACGAGGA 5550040 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7783360 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7783419 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 7783420 TACTAACGAGGATT 7783433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8832637 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8832696 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8832697 ATACTAACGAGGA 8832709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 4442157 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4442098 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4442097 TACTAACGAGGA 4442086 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 4443172 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4443113 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4443112 TACTAACGAGGA 4443101 >seq3933 Length=1153 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 338 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 279 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 278 TACTAACGAGGA 267 >seq5292 Length=975 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | | ||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 400 CTCCCCGTCGGTGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 459 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 460 TACTAACGAGGA 471 >seq4998 Length=1021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||| |||| ||||| |||||||||||||||| ||||| |||||| Sbjct 615 CTCCCCGTCGGGGAATCGCACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 674 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 675 TACTAACGAGGA 686 >seq3790 Length=1170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| ||| |||||||||||| ||||| |||||| Sbjct 613 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGTGTGACAGGCGGAGATACTGTCCACTA 554 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 553 TACTAACGAGGA 542 >seq13 Length=27425808 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| | ||||||||||| || ||||| ||||| Sbjct 18727084 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCTGCGTGACAGGCAGAGATACTGTCCACT 18727143 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 18727144 ATACTAACGAGGA 18727156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571750833147480