Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq28 113 3e-20 >seq28 Length=18419168 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||||||||| | || || ||||| || |||||||||||| Sbjct 12497834 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497893 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 12497894 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497953 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| || || ||| | || | || | || | | || || Sbjct 12497954 ATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 12498013 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || |||||||||||||||||||| Sbjct 12498014 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12498060 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||||||||| | || || ||||| || |||||||||||| Sbjct 12497378 CCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 12497437 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 12497438 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 12497497 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || ||||| ||| | | | || | || | | || | Sbjct 12497498 ATGCCTTCTTTGTC--CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 12497555 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| ||||| || || |||||||||||||||||||| Sbjct 12497556 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||||||| | || || ||||| || ||||||||||| Sbjct 12497072 TCCACCCCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 12497131 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 12497132 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12497191 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || ||||| || ||||| ||| | | | || | || | | || Sbjct 12497192 AATGCCTTCTTTGTC--CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 12497249 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 || || | |||||||| ||||| || || ||||||||||||||||| Sbjct 12497250 ACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323035220372960