Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2501 214 1e-50 seq5372 89.7 4e-13 >seq2501 Length=1373 Score = 214 bits (236), Expect = 1e-50 Identities = 315/441 (71%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| ||||| || |||||| || || || ||||| ||||| ||||||||||| Sbjct 543 CCTCTGAGCAAAGAGGAAAGAGACTTTCCAATCGCTTACTCTATGGTTATCCATGAGAAG 484 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| |||| ||||| || | || | |||||||| | |||||||| Sbjct 483 ATTGAGATGTTTGAGAGGCTCCTGCGTGCTATTTACACTCCTCAGAATGTTTACTGTGTT 424 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| |||||| || ||| || ||||| || | || ||| | || || Sbjct 423 CATGTGGACCAGAAGTCACCTAAGATCTTTTCTGAGGCTGTACAAGCTATTGTGTCTTGT 364 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || ||||||||||||| | || || |||||||| ||||| || Sbjct 363 TTTCCCAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTTGTCTATGCCTCTTGGTCACGA 304 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || ||||||||| | ||||| ||||| ||| | ||| || ||| || || |||| || Sbjct 303 GTTCAAGCTGACATCAACTGCATGGAGGACCTTCTCAAGT-CTCC-TGTCAAGTGGAGGT 246 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 | | || || ||||| ||| |||| || ||| |||| |||||||| ||| | || | Sbjct 245 ATCTCCTCAACACATGTGGGGCAGATTTTCCCTTAAAAACCAATGCAGAGCTTGTTCGCT 186 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGT---ACCTTCTGAGTCCa 108102 |||| || | | || || ||||| ||||||||||| || || ||| || | || Sbjct 185 CCCTGAAAAATCTCAATGGAAAGAATAGTATGGAGTCAGAAGTCACACCCTCACA---CA 129 Query 108103 aaaaaaaTCGCTGGAAATACC 108123 ||||| |||||| | |||| Sbjct 128 AAAAAGCCCGCTGGGAGTACC 108 >seq5372 Length=961 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 107692 TGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTG 107751 |||| ||||| || |||||| || || || ||||| ||||| ||||||||||||||| Sbjct 835 TGAGCAAAGAGGAAAGAGACTTTCCAATCGCTTACTCTATGGTTATCCATGAGAAGATTG 894 Query 107752 AAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACG 107811 | | ||||| |||| ||||| || | || | |||||||| | |||||||| || | Sbjct 895 AGATGTTTGAGAGGCTCCTGCGTGCTATTTACACTCCTCAGAATGTTTACTGTGTTCATG 954 Query 107812 TGGA 107815 |||| Sbjct 955 TGGA 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348229151882634