Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 98.7 9e-16 seq18 98.7 9e-16 seq24 95.1 1e-14 seq20 84.2 2e-11 >seq28 Length=18419168 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || ||||| || Sbjct 12497604 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497545 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| |||||| |||||| | || || |||||| Sbjct 12497544 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497485 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 12497484 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497425 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| || | ||||||||||||| Sbjct 12497424 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGCGGTA 12497376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| ||||| || || || || || ||||| ||||| || |||||| | || |||| Sbjct 12498067 AAACAAA-ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTG 12498009 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || |||| | || | ||||| | ||| |||||| |||||| | || | Sbjct 12498008 AGCCCAGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCC 12497949 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||||||| | || || || || ||||| ||| ||||||| || || || Sbjct 12497948 CAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCG 12497889 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || || || || || || || || || || ||||| || | ||||||||||||| Sbjct 12497888 ACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGCGGTA 12497832 >seq18 Length=24512808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| |||||||||||||| || | ||| | | ||| |||| Sbjct 14429336 TCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTGCTCTTCTT 14429395 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||||| ||||| |||| ||||| || | ||| ||||| || || | || Sbjct 14429396 TACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGGTTCCAAGT 14429455 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | ||||| || || ||||||| Sbjct 14429456 ACATCGCAAAAGCTCCAGGTCTCT 14429479 >seq24 Length=19702765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 |||||||||| ||||||||| | ||||||||||| ||||| ||||||||| | || | | Sbjct 12665064 GATTTGTCATCTTTCCGATTCAGTATCCAGACATGTGGAAAATGTACAAACAAGCCCAGG 12665005 Query 57598 CATCGTTTTGGACCGTCGAAGAAGT 57622 ||||||| ||||| |||||||| || Sbjct 12665004 CATCGTTCTGGACAGTCGAAGAGGT 12664980 >seq20 Length=22470590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 31294 AGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTAT 31353 |||| | || || |||||||||||||| || ||||||||||||||||||||||| | | Sbjct 17893726 AGGCATCCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAAGA-TGGAC 17893784 Query 31354 G-ACTATGAGCGATTATAACATTCAAAAAG 31382 | || || ||||||||||||||| |||| Sbjct 17893785 GCACACTGTCCGATTATAACATTCAGAAAG 17893814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445714351200720