Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 5e-13 seq24 89.7 5e-13 >seq25 Length=19457651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | || ||||| | || | || || Sbjct 18110019 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCTTC 18109960 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| || Sbjct 18109959 AGCCAGAAAATTGCAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAAGCC 18109900 Query 11774 ACTACTC 11780 || |||| Sbjct 18109899 ACCACTC 18109893 >seq24 Length=19702765 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||| || | || | ||| |||||||| |||| ||| || Sbjct 12661649 TCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCTTC 12661708 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||| || || || || || || || || || ||||| ||| Sbjct 12661709 AGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACGCT 12661768 Query 11774 ACTACTC 11780 |||| || Sbjct 12661769 ACTAATC 12661775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468470093873040