Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 2e-13 seq25 89.7 7e-13 seq24 87.8 2e-12 >seq18 Length=24512808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || ||||| ||| | || || || || ||||| | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || || || ||||| ||||| |||||||||||||| || |||| | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCATCTTAATGACCACTT 14415842 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 65076 | |||| ||| ||||| | || ||||| ||||| ||| | || | ||||| Sbjct 14415843 TCTGTGAAATCTCCCATACTGTCTTATACAACTC-CTTTACGTCGTTTGGAA 14415893 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||| |||||||||| || | || ||||| || |||||||| || || || | Sbjct 14425535 ACCTGAAACTCTCCAGACAGCACGCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 14425594 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 ||||||||||| |||| ||| || || || || ||||| ||||| || |||| Sbjct 14425595 GACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATGGGAGCCA 14425646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 |||| ||||| ||||||||||| ||||| ||||| || | || |||| ||| || Sbjct 14429329 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTGC 14429388 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | || ||||| | | || ||| | ||||| ||| Sbjct 14429389 TCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGGT 14429448 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||||||| || || | | ||||||| Sbjct 14429449 TCCAAGTACATCGCAAAAGCTCCAGG 14429474 >seq25 Length=19457651 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || || ||||| ||||| |||||||| | ||||||||||||| Sbjct 18107897 ACCTCTTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTATACATCTGCCAGATGTCATGA 18107838 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 || |||||||| || || ||||| | | | |||||| Sbjct 18107837 TACTGAATTGGGAAGATGACAAAGCGACGTGGATTTT 18107801 >seq24 Length=19702765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || ||||| | |||||||| ||||| | || | || | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| ||||||||||| || || || || ||||| ||||||||||| | Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 36300 C 36300 | Sbjct 12661767 C 12661767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 35810 CTTTAAAAATCAACATCTAGAGAAAAATGATTGTC--TTCT-TGAGACATAACTCCCATT 35866 ||||||||||| |||| |||| || | | ||| || | | ||||| ||||| | Sbjct 12660916 CTTTAAAAATCTGCATCGAGAGTGAATTCAGAGTCCGTTGTATTTGACATCACTCCAAAC 12660975 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||| ||| ||||||| || || || || |||||||| ||||| ||||| || Sbjct 12660976 CGTTGGTACTCAGCCACACGCTTCTCAAAGAAGTTAGTTTTTCCTTCCAATGAGATGAAC 12661035 Query 35927 TCCATGAAATCGAATGGATT 35946 ||||||||||||||||| || Sbjct 12661036 TCCATGAAATCGAATGGGTT 12661055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658095950098440