Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq25 105 1e-17 seq18 96.9 5e-15 >seq25 Length=19457651 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || ||||| || ||||| ||||| | ||| | Sbjct 18110021 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCT 18109962 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | ||||| |||||||| ||||||||||| || || || ||||| | Sbjct 18109961 TCAGCCAGAAAATTGCAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 18109902 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || ||| || Sbjct 18109901 CCACCACTCGCTCGCC 18109886 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || || ||||| ||||| |||||||| | |||||||||||| Sbjct 18107898 TACCTCTTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTATACATCTGCCAGATGTCATG 18107839 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| || |||||||| || ||||| | | ||||||| Sbjct 18107838 ATACTGAATTGGGAAGATGACAAAGCGACGTGGATTT 18107802 >seq18 Length=24512808 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| |||||||| || ||||| ||| | || || || || ||||| | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||| ||||| |||||||||||||| || |||| | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCATCTTAATGACCACTT 14415842 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 78955 | |||| ||| ||||| | || ||||| ||||| ||| | || | ||||| Sbjct 14415843 TCTGTGAAATCTCCCATACTGTCTTATACAACTC-CTTTACGTCGTTTGGAA 14415893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || ||||| ||||| ||||||||||| ||||| ||||| || || || |||| ||| Sbjct 14429325 CTCTACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCT 14429384 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||||| || || || || ||||| || | || ||||| | | || ||| | ||||| Sbjct 14429385 CTGCTCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCA 14429444 Query 80055 CGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 ||||||||||| || || | | |||| |||| Sbjct 14429445 GGGTTCCAAGTACATCGCAAAAGCTCCAGGTC 14429476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718184933139240