Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24 105 6e-18 seq25 93.3 4e-14 >seq24 Length=19702765 Score = 105 bits (116), Expect = 6e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || || || || || | || | ||| |||||||| |||| ||| | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || ||||||||||| || || || || || || || ||||| ||||||| Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 14014 CTATTAATCGTTC 14026 ||| |||||| || Sbjct 12661767 CTACTAATCGCTC 12661779 >seq25 Length=19457651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || || || | |||||||| | || | || | Sbjct 18110021 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCT 18109962 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || ||||||||||| ||||| || ||||| |||||||| || |||||||| | Sbjct 18109961 TCAGCCAGAAAATTGCAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 18109902 Query 14014 C 14014 | Sbjct 18109901 C 18109901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 14125 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 ||||||| | | ||||| |||| || |||||||||| ||| ||||| |||||||| || Sbjct 18108343 TCTCTTTTGGATCCTTGA--TGTACGTGTCAATAAGTAGGCTGTACATCTCAGAGTGAAT 18108286 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-G 14241 ||| ||||| || || || ||||||||||| || | || || | | ||| |||||| | Sbjct 18108285 GTTCTCCATGGCAATTTGGAAACCATAAAAACAGCGTGCCTCGGTCACTTGGACTTCCTG 18108226 Query 14242 AGTAAA 14247 ||| || Sbjct 18108225 AGTGAA 18108220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479671985759400