Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq24 100 3e-16 seq25 84.2 2e-11 >seq24 Length=19702765 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || || || || || | || | ||| |||||||| |||| ||| | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || || ||||| |||||||| || || || || || || ||||| ||||||| Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 13802 CTATTAGTCGTTC 13814 ||| || ||| || Sbjct 12661767 CTACTAATCGCTC 12661779 >seq25 Length=19457651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 13913 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||||||| | | ||||| |||| || |||||||||| ||| ||||| |||||||| || Sbjct 18108343 TCTCTTTTGGATCCTTGA--TGTACGTGTCAATAAGTAGGCTGTACATCTCAGAGTGAAT 18108286 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-G 14029 ||| || || || || || |||||||||||||| | || || | | ||| || ||| | Sbjct 18108285 GTTCTCCATGGCAATTTGGAAACCATAAAAACAGCGTGCCTCGGTCACTTGGACTTCCTG 18108226 Query 14030 AGTAAA 14035 ||| || Sbjct 18108225 AGTGAA 18108220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478532918775240