Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq28 89.7 4e-13 >seq28 Length=18419168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| |||| ||| |||||| || | |||||| ||||||| || || | || || Sbjct 12497851 CACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTC 12497910 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||||||||| |||| | ||| || || | || | |||||||| || Sbjct 12497911 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 12497970 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| | ||| ||||| | | ||| || || | || || || || Sbjct 12497971 GATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 12498030 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTAT 43123 || || || ||||||||||| || |||||||| || | | ||| Sbjct 12498031 GCCAGTCAGGGTTTTCACAAAGATCTGCATTTTGTTTAGTCTAT 12498074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| |||| ||| |||||| || | |||||| ||||||| || || | || || Sbjct 12497623 CACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTC 12497682 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||||||||| |||| | ||| || || | || | |||||||| || Sbjct 12497683 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 12497742 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| | ||| ||||| | | ||| || || | || || || || Sbjct 12497743 GATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 12497802 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||||||||| || ||||| Sbjct 12497803 GCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381326183573778