Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18 100 4e-16 seq25 96.9 5e-15 seq24 93.3 6e-14 >seq18 Length=24512808 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || |||||||| || ||||| |||| | || || || ||||| || | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || || ||||| ||||| |||||||||||||| || |||| | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCATCTTAATGACCACTT 14415842 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038 | |||| ||| ||||| | || ||||| ||||| ||| | || | ||||| Sbjct 14415843 TCTGTGAAATCTCCCATACTGTCTTATACAACTC-CTTTACGTCGTTTGGAA 14415893 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 ||||| ||||| ||||||||||| ||||| ||||| || || || |||| ||| || Sbjct 14429328 TACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTG 14429387 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||| || || || || ||||| || | || ||||| | | || ||| | ||||| || Sbjct 14429388 CTCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGG 14429447 Query 72141 TTCCAAGTATATGGCCATAACTCCCGG 72167 ||||||||| || || | | |||| || Sbjct 14429448 TTCCAAGTACATCGCAAAAGCTCCAGG 14429474 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||| |||||||||| || | || ||||| || |||||||| || || || | Sbjct 14425535 ACCTGAAACTCTCCAGACAGCACGCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 14425594 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| || || || || ||||| ||||| || |||| | ||| Sbjct 14425595 GACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATGGGAGCCAAGAGCAGA 14425654 Query 71263 CTATT 71267 || || Sbjct 14425655 CTGTT 14425659 >seq25 Length=19457651 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| || ||||| || ||||| ||||| | ||| | Sbjct 18110021 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCT 18109962 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| || ||||| ||||||||||| || || || ||||| | Sbjct 18109961 TCAGCCAGAAAATTGCAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 18109902 Query 42207 C 42207 | Sbjct 18109901 C 18109901 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| ||||| | ||||| || || || || ||||| |||||||| | |||||| ||||| Sbjct 18107898 TACCTCTTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTATACATCTGCCAGATGTCATG 18107839 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| ||||||||||| || ||||| | | ||||||| Sbjct 18107838 ATACTGAATTGGGAAGATGACAAAGCGACGTGGATTT 18107802 >seq24 Length=19702765 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || ||||| | |||||||| ||||| | || | || | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||||||||| || || ||||| ||||| ||||||||||| | Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 42207 C 42207 | Sbjct 12661767 C 12661767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671060836109160