Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq28 150 4e-31 seq25 104 5e-17 >seq28 Length=18419168 Score = 150 bits (166), Expect = 4e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| ||||| ||||| Sbjct 12497831 ATACCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCG 12497890 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || || || Sbjct 12497891 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 12497950 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || || || ||||| || | ||| || || || || Sbjct 12497951 GGAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 12498010 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| || || || ||||| ||||| || ||||| ||||| ||||||||||||| || Sbjct 12498011 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTTGTTTA 12498068 >seq25 Length=19457651 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| || || || ||||| || ||||||||||| || || || ||| Sbjct 18109898 GTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTGCAATTTTCTGG 18109957 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || |||||||||||||| | || ||||| || ||| | || ||||| || Sbjct 18109958 CTGAAGAAGAGGGGCCTTATGCCAGGCCTCACCTTCTCCAATGAACTCATCAGCAGAGAT 18110017 Query 269258 GA 269259 || Sbjct 18110018 GA 18110019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151260598840428