Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 >seq7 Length=31027439 Score = 111 bits (122), Expect = 1e-19 Identities = 128/171 (75%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||||||||| |||| ||||| ||||| || ||||| || || | ||| Sbjct 6110643 CATGTCTTTGTACTCTGCTCCAAAATGTCTCCATTGGAAGCCATACACGGGGCCCAAGTC 6110584 Query 25833 TCCATCTTCCCTGTGCTCA---AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGC 25889 || || || | ||||| || || ||||||| | ||| |||| ||| || ||||| Sbjct 6110583 ACCTTCCTCAC---GCTCAGTGAATCCATTCTTATCAAGAAACTCTCGGGAGCCGTTGGC 6110527 Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||| ||||| || || ||||| || |||||||| | ||||| || || Sbjct 6110526 ATCCCAAATCTTCACACCTTTCTCTGAAAGCTCTTTCGCATTTGTAGAACC 6110476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340098877566393