Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq25 163 4e-35 seq17 116 5e-21 seq22 91.5 2e-13 >seq25 Length=19457651 Score = 163 bits (180), Expect = 4e-35 Identities = 203/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||| |||||||| | || || || ||| | | || | |||| ||| |||| || Sbjct 19206292 CCCGTTGACGTTATTGCATACCAGTTTCTGCAGCGAGGCCGTGTTGATGATGTCAAAGCC 19206233 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 || || ||||| || |||||||| |||||||| | || ||||||||| ||| |||| Sbjct 19206232 GACTTCGCCGCCAAACGTGCTGGGCTTCCAGTACTCAGGCGAGCAGATGGGGTTTCCCAT 19206173 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 ||||||||| || || | ||||| |||| ||| | ||| |||| || ||||||||||| Sbjct 19206172 GAGGCCTTTCAGTGAGTAAGGAGCACCCATCTCCACCATGGTCTCTCCAAAGATGGCGTT 19206113 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 ||| || |||||||| || | | |||||||||| ||||| ||| || | |||||||| Sbjct 19206112 GGGCCGTGGCTTTTCAACGAGAAGACCGGTGTACAGCTCCATAGCATCAACATCTCCGTA 19206053 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || || || || ||||| || |||| Sbjct 19206052 CAGTTCCTCCAGCTCCGCTGCCATCTCCTTATCACCTG 19206015 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||||| ||||||||||| | ||||| ||| ||||| || Sbjct 19204343 TCACCAATCAAGATGAGTCTTGTGGTCTGAAAGCGCCTCTCGTCGTCCCAATCTGGGTGC 19204284 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || ||||| || ||||| | ||||||||||| ||||||||||||||||||||| Sbjct 19204283 ACCTGCTTAAGAACGTCACACACACGGTTGTGTTCCCGAAGCCAGATAGTAGCGTACATC 19204224 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || || ||||| || ||||| || || || ||||| Sbjct 19204223 ATGAGGCCTGGGACCAGACCGAAAGCTTCGTGGCCTACAGC 19204183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 10051 TAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAACTGGTGCGTGAAATGTTGGC 10110 |||||||||||||||||||| || ||||| | || |||||||| ||||| || || Sbjct 19203741 TAGTGAAGGCCGGGCCTCGCTTCATGTCAGTTTTGAAGAACTGGTGTGTGAAGTGCTGAG 19203682 Query 10111 CAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGAGTGAAGGTCCTCC-GAAGA 10169 |||| ||||| ||||| | ||||||| ||| || || || |||| || ||| || | Sbjct 19203681 CAAAGAAGGCGAACATGAGATTGGTGCGCTGTGGGTCAGGGATGAACTTCTTCCTGACCA 19203622 Query 10170 AGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttttttttACCTG 10218 || || | | || ||| | | |||| ||||| | |||| |||||| Sbjct 19203621 GGAACTTCTCCACCACCGTCT-TCACATCAGGCAGCTCTTTTCTACCTG 19203574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 9446 CATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTT 9505 |||| |||||||| | |||||||| || | ||||||||||||| | || || || | Sbjct 19204728 CATCGGGCATGAGCGGGTGCCAGTGGTAAAGGGTGTTAAACTCGGACGAGATCCGGTTCT 19204669 Query 9506 GGTACTGG-AACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAG 9564 |||||||| ||||| | ||| || || || || | ||| | || |||||||||| Sbjct 19204668 GGTACTGGAAACGATG-GTTAAACAGGAGCTCTGGATCAAATTTAAGCTTAAAGTGGTAG 19204610 Query 9565 CCGCTGAGCTGCTGAACATACTGCGTCACGATAATGTTGATTGTTTCCCC 9614 |||| || ||||| || || | | | || ||| ||||| ||||| || Sbjct 19204609 GCGCTCAGGTGCTGCACGTATTCCTCAATGACAATCTTGATGGTTTCACC 19204560 >seq17 Length=25916894 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || |||||| |||| ||||| | || || || |||||||| ||||||| | |||||| Sbjct 12843066 TTTACGATCTCAAATCCCACTTTGCCACCAAACGTGCTGGGCATCCAGTACTCAGGGGAG 12843007 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 ||||| || |||| || |||||||||||| | || || |||| ||| | ||| || Sbjct 12843006 CAGATAGGATTTCCCATAAGCCCTTTGAGGGAATAGGGGGCACCCATCTCTACCATGGTC 12842947 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || | || ||| | | || || ||||||| || |||||||| | ||||||| Sbjct 12842946 TCTCCAAACACAGCATTGTGCCTTGGTTTCTCCACCAGAAAGCCGGTGTAGAGCTCCACA 12842887 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | | ||||| || ||| | | || || ||||| | || || || ||| Sbjct 12842886 GAGTTCACATCTCCATACAGGCTCTTCAGATCTGCAGCAAGCTCTTTATCGCCT 12842833 Score = 113 bits (124), Expect = 6e-20 Identities = 193/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTG--GATAGTTGCACTCTTGACGATCCCAAACC 8756 ||||| |||||| | ||||| || | ||||| || | || |||||| |||| | Sbjct 12828189 CCTTTAACGTTGATGCAGACGAGTTTCCTCAGATAG--GCCATGTTTACGATCTCAAATC 12828132 Query 8757 CCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCA 8816 |||| | || || || |||||||| |||||||| | ||||||||||| || ||| Sbjct 12828131 CCACTTTGCCACCAAACGTGCTGGGCATCCAGTAATCAGGGGAGCAGATAGGATTTCCCA 12828072 Query 8817 TGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGT 8876 | || |||||||||||| | ||||| |||| ||| | ||| | || || || | || | Sbjct 12828071 TAAGCCCTTTGAGGGAATAGGGAGCACCCATCTCTACCATGGTATCTCCAAACACAGCAT 12828012 Query 8877 TGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGT 8936 || | | || || ||||||| | |||||||| | |||||||| | | |||| | Sbjct 12828011 TGTGCCTTGGTTTCTCCACCAGAAGGCCGGTGTAGAGCTCCACAGAGTTCACAGCTCCAT 12827952 Query 8937 AAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | ||| | | || || |||| || || || || ||| Sbjct 12827951 ACAGGCTCTTCAGATCTGCAGTGAGCTCTTTATCGCCT 12827914 Score = 113 bits (124), Expect = 6e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | || || || || || || || || | || ||| |||| || ||||| Sbjct 12841379 TCACCGATCAGTATAAGGCGTGTTGTTTGGAAAAGACGCTCATCATTCCAGTCCGGATGC 12841320 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| | |||||||| | ||||||||| ||||||||||| || || |||||| Sbjct 12841319 TCCTGCTTCAGGATGTCGCACACACGGTTGTGTTCTCTGAGCCAGATTGTGGCATACATC 12841260 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || |||||||| || || || || || || || | || | | || | Sbjct 12841259 ATGAGGCCGGGGACCAGGCCGAACGCTTCATGGCCCACTGCGAACCGTAACTCGTCACGA 12841200 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 | | || || ||| ||| | ||||| || ||||| ||| || ||||||| || Sbjct 12841199 ATGTGAGGTGGGTAGTGCATCTCGACCTGAACGTCTTTAACCAGAGGAGGATACACCTCT 12841140 Query 9850 CCGTC 9854 ||||| Sbjct 12841139 CCGTC 12841135 >seq22 Length=19874160 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||| || |||| ||||||||||| ||||| || || | ||| ||||| ||| Sbjct 12336542 CCTATAATAATAAGTCTGGTGGTCTGAAAGAGTTGCTCATCTCCCCAGGTGGGATGCTCT 12336483 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 || || | || ||||| | ||||||||| | ||||| | || |||||||| | Sbjct 12336482 TTCTTTAGGATGTCACACACACGGTTGTGTTCACGCAGCCACAGGGTGGCGTACATGCTT 12336423 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 | || |||| ||||||||| |||| || || | ||||| || | | | || ||| Sbjct 12336422 AAGCCTGGCAACAGGCCAAACACCTCCTGCCCAATAGCCATTTGCTTTTCTGGTGGAACT 12336363 Query 9793 TCGGGAGGATAGATCATGTGCAC 9815 ||||| ||| |||||| ||| Sbjct 12336362 GATGGAGGGTAGTTCATGTTCAC 12336340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708442070873040