Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq28 102 7e-17 >seq28 Length=18419168 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||||||||| | ||||| ||||| | ||||| || | || ||| | || || || Sbjct 12498067 AAACAAAATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA 12498008 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| |||||||| ||| | ||||| || || |||||||||||||| || || Sbjct 12498007 GCCCAGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCC 12497948 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || || ||||| ||||| | | ||||||||| || ||||||| Sbjct 12497947 AGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATG 12497904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || ||| ||| Sbjct 12497832 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497773 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| || || || || Sbjct 12497772 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497713 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | ||||||||| || ||||||| Sbjct 12497712 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATG 12497676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || ||| ||| Sbjct 12497604 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497545 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| || || || || Sbjct 12497544 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497485 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 12497484 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 12497448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429887054607855