Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11 118 7e-22 seq3 111 1e-19 seq28 104 2e-17 seq25 91.5 1e-13 seq21 89.7 3e-13 >seq11 Length=28208075 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5360414 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAATGGGAATCTCGT 5360355 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| ||||||||||||| ||||||| Sbjct 5360354 TCATCCATTCATATGCGTCACTAATTAAATGACGA 5360320 >seq3 Length=35853109 Score = 111 bits (122), Expect = 1e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA-AACGA 6379 || || || | |||||| || || ||||| || ||||| |||||||| |||||| || || Sbjct 19775164 CCAACCAAGTTTTTCGGCTGTGAGCTTGGGGCACAGACCCAGTTTGA-CACAAAGAATGA 19775222 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 |||| ||| || ||||| || ||| | | ||| ||||||||| | || || || || Sbjct 19775223 CCGCTACATAGTGAACGGCTCCCATGAGGCCAACAAACTGCAGGACATGCTGGATGGATT 19775282 Query 6440 TATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || ||||||||||||||||| | || || ||||| || ||||| || Sbjct 19775283 CATACGCAAGTTTGTGCTGTGCCCTGAGTGTGATAATCCTGAGACTGA 19775330 >seq28 Length=18419168 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| ||||| ||||| || || ||| |||||| || |||||||| || | Sbjct 12497832 TACCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 12497891 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || |||||||| || || | || || || | || Sbjct 12497892 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 12497951 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||||| ||| ||||||| | || || | |||| Sbjct 12497952 GAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 12498011 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||| ||||||||| || |||||||| || Sbjct 12498012 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTT 12498063 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||||| ||||| || || ||| |||||| || |||||||| || | Sbjct 12497604 TACCACCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 12497663 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || |||||||| || || | || || || | || Sbjct 12497664 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 12497723 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||||| ||| || |||| | || || | |||| Sbjct 12497724 GAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 12497783 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||| || |||||||| Sbjct 12497784 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| ||||| ||||| || || ||| |||||| || |||||||| || | Sbjct 12497376 TACCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 12497435 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || || || | || Sbjct 12497436 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 12497495 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||||| ||| || |||| | || || | |||| Sbjct 12497496 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 12497555 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||| || |||||||| Sbjct 12497556 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 >seq25 Length=19457651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25911 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTT 25965 ||||||||||||||||| |||||||||| ||||| || ||||| ||| |||| || Sbjct 10944178 CCCTTGGCTGTGGTTTCAGTAGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATT 10944237 Query 25966 CATGCGCGTCACTAATTAGATGA 25988 ||||| ||||||||||||||||| Sbjct 10944238 CATGCCCGTCACTAATTAGATGA 10944260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 ||||| ||||| | || || || || ||||||||| || ||||| || | ||| || Sbjct 11537516 TTCGGCTGCGAGTTGGGAGCCCAAACCCAGTTTGATGCAAAGAACGACCGTTACATTGTC 11537575 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || || | | ||| ||||| ||| | || || || || |||||||||||| Sbjct 11537576 AACGGGTCTCACGAGGCAAACAAACTGCAAGACATGCTGGATGGATTCATTCGCAAGTTT 11537635 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||| || || || || || ||||| || Sbjct 11537636 GTGCTGTGTCCAGAGTGTGACAATCCTGAGACTGA 11537670 >seq21 Length=20987006 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||||| | ||| || ||| Sbjct 5143150 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTCACCATCAGTTTCGG 5143091 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||| ||||| Sbjct 5143090 GCCGGTATTTAACCTTA 5143074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334909068459371