Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 2e-14 seq24 87.8 2e-12 seq18 87.8 2e-12 >seq25 Length=19457651 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || || ||||| ||||| |||||||| | ||||||||||||| Sbjct 18107897 ACCTCTTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTATACATCTGCCAGATGTCATGA 18107838 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGAtttt 33255 || |||||||| || || ||||| | | |||||||| Sbjct 18107837 TACTGAATTGGGAAGATGACAAAGCGACGTGGATTTT 18107801 >seq24 Length=19702765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || ||||| | |||||||| ||||| | || | || | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| ||||||||||| || || || || ||||| ||||||||||| | Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 32803 C 32803 | Sbjct 12661767 C 12661767 >seq18 Length=24512808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || |||||||| || ||||| ||| | || || || || ||||| | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||||| ||||| |||||||||||||| || || | | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCATCTTAATGACCACTT 14415842 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62087 | |||| ||| ||||| | || ||||| ||||| ||| | || | ||||| Sbjct 14415843 TCTGTGAAATCTCCCATACTGTCTTATACAACTC-CTTTACGTCGTTTGGAA 14415893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 |||| ||||| ||||||||||| ||||| ||||| || || || |||| ||| || Sbjct 14429329 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTGC 14429388 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 || || || || || ||||| || | || ||||| | | || ||| | ||||| ||| Sbjct 14429389 TCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGGT 14429448 Query 63191 TCCAAGTATATGGCCATAACTCCAGG 63216 |||||||| || || | | ||||||| Sbjct 14429449 TCCAAGTACATCGCAAAAGCTCCAGG 14429474 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||| |||||||||| || | || ||||| || |||||||| || || || | Sbjct 14425535 ACCTGAAACTCTCCAGACAGCACGCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 14425594 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 ||||||||||| |||| ||| || || || || ||||| ||||| || |||| Sbjct 14425595 GACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATGGGAGCCA 14425646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633558015543600