Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq28 105 6e-18 >seq28 Length=18419168 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| | || || || || |||| ||||| || || || Sbjct 12498063 AAAATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 12498004 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| ||||| || ||||| || || ||||| || || Sbjct 12498003 AGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGAC 12497944 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||| ||| | || ||| ||||||| | ||||| ||| Sbjct 12497943 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 12497884 Query 22396 AACATTCAAAAAGAATCCACC 22416 || || || || || |||||| Sbjct 12497883 AATATCCAGAAGGAGTCCACC 12497863 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| ||||| || || ||| Sbjct 12497832 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 12497773 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| || ||||| || || ||||| || || || Sbjct 12497772 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 12497713 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| ||||| Sbjct 12497712 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 12497653 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 12497652 ATCCAGAAGGAGTCCACC 12497635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419680216721665