Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 118 2e-21 seq25 96.9 7e-15 seq24 93.3 8e-14 >seq18 Length=24512808 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| |||||||||||||| ||||| ||| ||| || ||||||||| Sbjct 14425535 ACCTGAAACTCTCCAGACAGCACGCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 14425594 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | |||||||| ||||| || ||| ||||| |||||||| | || |||||| Sbjct 14425595 GACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATGGGAGCCAAGAGCAGA 14425654 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| | || |||||||| Sbjct 14425655 CTGTTGCGTACACCGTGCCT 14425674 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || ||||||||||| || | ||| |||||||||| |||||| Sbjct 14429329 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGGTCCCTGGCTCTCTGC 14429388 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| ||| |||| |||||||||| ||| | ||||||||| Sbjct 14429389 TCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATGTCAAAGTGCCAGGGT 14429448 Query 245123 TCCATGTA 245130 |||| ||| Sbjct 14429449 TCCAAGTA 14429456 Score = 111 bits (122), Expect = 3e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| ||| | ||||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 14427927 CACCTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGT 14427986 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||||| ||| || ||| |||| ||||||||||||||||| | |||| | || Sbjct 14427987 ACCCAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGT 14428046 Query 244825 CCCGGTCTC 244833 |||||||| Sbjct 14428047 GCCGGTCTC 14428055 >seq25 Length=19457651 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 |||||| | |||| || ||| | || || ||||| ||||||||||| || | || || Sbjct 18109886 GGCGAGCGAGTGGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCT 18109945 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || |||||||| ||| ||| || ||||| || ||||||||||| || |||||| Sbjct 18109946 GCAATTTTCTGGCTGAAGAAGAGGGGCCTTATGCCAGGCCTCACCTTCTCCAATGAACTC 18110005 Query 42816 ATCAGCAGGGACGAGG 42831 |||||||| || |||| Sbjct 18110006 ATCAGCAGAGATGAGG 18110021 >seq24 Length=19702765 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || ||||| || ||||| ||||| || | || || ||||||||||| Sbjct 12661770 GTAGCGTTTGCGGCAGTCGAAGGGATCTTTTTCTCAGGATCATTTGCTGCCATCTTCTGG 12661711 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| | | |||| | |||||| |||||||||| ||| || || |||||||| || || Sbjct 12661710 CTGAAGAAAAGAGGT-TTGATGCCTGGACTCACCTACTCCAATGAGCTCATCAGTAGAGA 12661652 Query 42827 CGAGG 42831 |||| Sbjct 12661651 TGAGG 12661647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944228936594160