Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq28 89.7 4e-13 seq6278 82.4 6e-11 >seq28 Length=18419168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| ||||||||||| || || ||| ||||||||| || ||||| || | Sbjct 12497833 ACCGCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 12497892 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| |||||||||||||| ||||| | |||||| || || Sbjct 12497893 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12497952 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | || ||||||||| ||||| || || | || || | ||| | | || Sbjct 12497953 AATGCCTTCTTTGTCCTGGATTTTAGCCT---TGACATTCTCAATGGTGTCACTGGGCTC 12498009 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | || || || || || || || |||||||||||||| |||||||| Sbjct 12498010 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATTTT 12498063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| ||||||||||| || || ||| ||||||||| || ||||| || | Sbjct 12497605 ACCACCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 12497664 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| |||||||||||||| ||||| | |||||| || || Sbjct 12497665 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12497724 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||||||||| ||||| ||| | | ||| | | ||| | | || Sbjct 12497725 AATGCCTTCTTTGTCCTGGATTTTAGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCAA 12497783 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || || |||||||||||||| ||||| Sbjct 12497784 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 >seq6278 Length=784 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAA-GATCTAAGGAA 114389 |||||||| ||||| ||||| |||| |||||||||||||| || | | |||| |||||| Sbjct 153 CATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAACGTGTGGAGCGATCAAAGGAA 212 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 213 CCATAACTGATTTAATGAGCCATTCG 238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAA-GATCTAAGGAA 115586 |||||||| ||||| ||||| |||| |||||||||||||| || | | |||| |||||| Sbjct 153 CATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAACGTGTGGAGCGATCAAAGGAA 212 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 213 CCATAACTGATTTAATGAGCCATTCG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397017197051482