Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28 123 6e-23 >seq28 Length=18419168 Score = 123 bits (136), Expect = 6e-23 Identities = 179/248 (72%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 288226 GATATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCT 288285 |||| ||| ||| |||| ||||||| ||||| | || || || || | ||| || Sbjct 12497056 GATAGGAT-ATT--TACA-GTCCACCCCGGAGGCGGAGAACCAGGTGGAGGGTGGACTCC 12497111 Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || |||||||| ||||||| || ||||| || ||||| | || || || || |||||| Sbjct 12497112 TTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 12497171 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| || |||||| || |||||||| ||||||||||| || || ||||| Sbjct 12497172 AGCCTCTGCTGG---TCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTC 12497228 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| || || || Sbjct 12497229 TCAATGGTGTCACTGGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTTTTCACA 12497288 Query 288463 AATATCTG 288470 || ||||| Sbjct 12497289 AAGATCTG 12497296 Score = 118 bits (130), Expect = 3e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || ||||| || ||||| | || || || || ||| Sbjct 12497870 TCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 12497929 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || |||||||| ||||||||||| || || || Sbjct 12497930 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACA 12497986 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| || ||||| || || Sbjct 12497987 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTC 12498046 Query 288460 ACGAATATCTGCATTATGTT 288479 || || ||||||||| |||| Sbjct 12498047 ACAAAGATCTGCATTTTGTT 12498066 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || ||||| || ||||| | || || || || ||| Sbjct 12497414 TCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 12497473 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || |||||||| ||||||||||| || || ||| Sbjct 12497474 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACG 12497530 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| || ||||| || || Sbjct 12497531 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTC 12497590 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 12497591 ACAAAGATCTGCAT 12497604 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || ||||| || ||||| | || || || || ||| Sbjct 12497642 TCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 12497701 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || |||||||| ||||||||||| || || ||| Sbjct 12497702 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCTTTGTCCTGGATTTTAGCCTTGACG 12497758 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| || ||||| || || Sbjct 12497759 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTC 12497818 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 12497819 ACAAAGATCTGCAT 12497832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179513217118198