Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 seq12 87.8 2e-12 seq25 84.2 2e-11 >seq20 Length=22470590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||| |||||||||||||||| ||||| || Sbjct 20570424 TTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 20570365 Query 57063 ACTATACTACCGAGGATTGAATATATA-ACTTGAATAT 57099 ||||||||| |||||| ||| || | | |||| || || Sbjct 20570364 ACTATACTAACGAGGACTGAGTACAAAGACTTCAAAAT 20570327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| || ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 20571953 AAACTTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 20571894 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 20571893 GTCCACTATACTAACGAGGA 20571874 >seq12 Length=28145556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| || Sbjct 8969134 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 8969075 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 8969074 ACTATACTAACGAGGA 8969059 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8967303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8967362 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8967363 ATACTAACGAGGA 8967375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8970109 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8970050 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8970049 ATACTAACGAGGA 8970037 >seq25 Length=19457651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 5549967 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 5550026 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 5550027 TATACTAACGAGGA 5550040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7783360 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7783419 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 7783420 TACTAACGAGGATT 7783433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 8832637 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 8832696 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8832697 ATACTAACGAGGA 8832709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543149373115440