Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 82.4 7e-11 >seq18 Length=24512808 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/117 (76%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| |||||| | |||| ||||||||| | ||| ||||||||||| |||||| | || Sbjct 14427930 CTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACC 14427989 Query 146724 CAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || || | ||||| || |||| ||||||| ||||||||| | ||||||||| Sbjct 14427990 CAGGTTCTGCTGGTTGCT---CTTGCGATTGCAGGCGTCCTTGTATAACATGTACGG 14428043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475445279337840