Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq28 82.4 7e-11 >seq28 Length=18419168 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || || || || || ||||| |||||||| || ||| | ||| ||| Sbjct 12497392 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATC 12497451 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | |||||||| || |||||||||||||| || Sbjct 12497452 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 12497511 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || ||||| |||| || | || | |||||| | ||| || || || || | | Sbjct 12497512 CTGGATTTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGG 12497570 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || ||||| ||||| || ||||| Sbjct 12497571 TCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || || || || || ||||| |||||||| || ||| | ||| ||| Sbjct 12497620 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATC 12497679 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | |||||||| || |||||||||||||| || Sbjct 12497680 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 12497739 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || ||||| |||| || | || | |||||| | ||| || || || || | | Sbjct 12497740 CTGGATTTTAGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGG 12497798 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || ||||| ||||| || ||||| Sbjct 12497799 TCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451950422976360