Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 107 3e-18 seq25 86.0 9e-12 >seq17 Length=25916894 Score = 107 bits (118), Expect = 3e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||| || || || || | || || || |||||||| |||||||| | Sbjct 12843072 GCCGTGTTTACGATCTCAAATCCCACTTTGCCACCAAACGTGCTGGGCATCCAGTACTCA 12843013 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||||||||| || |||| |||||||| | |||| | || || |||| ||| | Sbjct 12843012 GGGGAGCAGATAGGATTTCCCATAAGCCCTTTGAGGGAATAGGGGGCACCCATCTCTACC 12842953 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || || | ||| | | | ||||| || || | ||||| |||||||| Sbjct 12842952 ATGGTCTCTCCAAACACAGCATTGTGCCTTGGTTTCTCCACCAGAAAGCCGGTGTAGAGC 12842893 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| | || || ||||| ||| | || || ||||| | ||| || || ||| Sbjct 12842892 TCCACAGAGTTCACATCTCCATACAGGCTCTTCAGATCTGCAGCAAGCTCTTTATCGCCT 12842833 Query 9176 ACAA 9179 | || Sbjct 12842832 AAAA 12842829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || || ||||| || | |||| ||| ||| ||||| || || || || || Sbjct 12841367 ATAAGGCGTGTTGTTTGGAAAAGACGCTCATCATTCCAGTCCGGATGCTCCTGCTTCAGG 12841308 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | ||||| || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 12841307 ATGTCGCACACACGGTTGTGTTCTCTGAGCCAGATTGTGGCATACATCATGAGGCCGGGG 12841248 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||| |||||| |||||||| || || | || || | | | || | Sbjct 12841247 ACCAGGCCGAACGCTTCATGGCCCACTGCGAACCGTAACTCGTCACGAATGTGAGGTGGG 12841188 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || |||| | ||||| ||||| || || ||||||| || ||||| | ||| Sbjct 12841187 TAGTGCATCTCGACCTGAACGTCTTTAACCAGAGGAGGATACACCTCTCCGTCCAACACC 12841128 Query 9967 TGA 9969 ||| Sbjct 12841127 TGA 12841125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || ||||| || || || || | || || || |||||||| ||||||| | |||||| Sbjct 12828147 TTTACGATCTCAAATCCCACTTTGCCACCAAACGTGCTGGGCATCCAGTAATCAGGGGAG 12828088 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 ||||| || |||| |||||||| | |||| | ||||| |||| ||| | ||| | Sbjct 12828087 CAGATAGGATTTCCCATAAGCCCTTTGAGGGAATAGGGAGCACCCATCTCTACCATGGTA 12828028 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || | ||| | | | ||||| || || | | ||| |||||||| || ||| Sbjct 12828027 TCTCCAAACACAGCATTGTGCCTTGGTTTCTCCACCAGAAGGCCGGTGTAGAGCTCCACA 12827968 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | || | ||||| ||| | || || |||| | ||| || || ||| Sbjct 12827967 GAGTTCACAGCTCCATACAGGCTCTTCAGATCTGCAGTGAGCTCTTTATCGCCT 12827914 >seq25 Length=19457651 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 9547 AAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGG 9606 || ||||| |||| || | |||||| |||| ||||| || ||||||| || || ||| Sbjct 19204732 AAGTCATCGGGCATGAGCGGGTGCCAGTGGTAAAGGGTGTTAAACTCGGACGAGATCCGG 19204673 Query 9607 TTCTGGTACTG--AAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||||||||||| || | ||| ||||| | ||| || ||||| | |||| |||| Sbjct 19204672 TTCTGGTACTGGAAACGATGGT--TAAACAGGAGCTCTGGATCAAATTTAAGCTTAAAGT 19204615 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||| |||| || ||||| || || | || | ||| || |||||||| || Sbjct 19204614 GGTAGGCGCTCAGGTGCTGCACGTATTCCTCAATGACAATCTTGATGGTTTCACC 19204560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723643495709400