Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq28 131 4e-25 >seq28 Length=18419168 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || |||||||| || |||||||| |||| |||||||| | || || | ||||| Sbjct 12497620 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATC 12497679 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || ||| |||||| || Sbjct 12497680 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 12497739 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| | | || || || | ||||| || Sbjct 12497740 CTGGATTTTAGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 12497799 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||||||||| || || Sbjct 12497800 CTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497829 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || |||||||| || |||||||| |||| |||||||| | || || | ||||| Sbjct 12497392 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATC 12497451 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| |||||| || Sbjct 12497452 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 12497511 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| | | || || || | ||||| || Sbjct 12497512 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 12497571 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||||||||| || || Sbjct 12497572 CTTGCCAGTCAGGGTTTTCACAAAGATCTG 12497601 Score = 127 bits (140), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || |||||||| || |||||||| |||| |||||||| | || || | ||||| Sbjct 12497848 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATC 12497907 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || ||| |||||| || Sbjct 12497908 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 12497967 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| | | || || || | ||||| || Sbjct 12497968 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 12498027 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || ||||||||||| || || |||||| Sbjct 12498028 CTTGCCAGTCAGGGTTTTCACAAAGATCTG---CATTTT 12498063 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||||| | || || | |||||| Sbjct 12497088 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 12497147 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| || ||| |||||| ||| Sbjct 12497148 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 12497207 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 12497208 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGTGTGATGGTC 12497267 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||||||||| || || Sbjct 12497268 TTGCCAGTCAGGGTTTTCACAAAGATCTG 12497296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178780504820847