Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2 114 5e-20 seq16 109 2e-18 seq17 91.5 6e-13 seq8 87.8 7e-12 >seq2 Length=37257225 Score = 114 bits (126), Expect = 5e-20 Identities = 275/414 (66%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| ||||| | ||||||| | || ||||| || | ||| | ||| ||||| || Sbjct 5826324 AGGCAAGCCGAAGGTTCAAGTCGAGTACAAAGGGGAGAAGAAATCCTTTTACCCTGAGGA 5826383 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 || || || |||||||| |||||||| |||| ||||| ||| |||| Sbjct 5826384 GATCTCCTCCATGGTTCTGGTGAAAATGAAGGAAATCGCAGAGGCCTATCTTGGACAGAA 5826443 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| || | || || ||||||||||| || || |||||||| | || | ||||| || Sbjct 5826444 AGTAACAAACGCTGTTATTACTGTTCCTGCCTACTTCAATGACTCTCAGAGACAAGCCAC 5826503 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||||||| ||| |||||||| | || || || | || || || || || ||||| Sbjct 5826504 TAAAGATGCTGGAGTGATTGCTGGACTGAACGTCCTGAGGATCATCAACGAGCCCACAGC 5826563 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 || || || || || || || ||| || ||||| || ||| ||||| | | Sbjct 5826564 TGCAGCGCTCGCCTACGGCCT-GGACAAAGGCAAGAA--AGGAGAGCGCAATATCCTGAT 5826620 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 ||||| | || || || || ||| || | || | || |||||||| | || Sbjct 5826621 CTTTGACCTGGGAGGTGGTACCTTCGATGTGTCCATCCTGACCATCGAAGATGGCATCTT 5826680 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||| || || || || || ||||| || || || || || |||| || Sbjct 5826681 TGAAGTGAAAGCCACAGCCGGAGACACTCACCTGGGCGGAGAGGACTTTGACAA 5826734 >seq16 Length=25964114 Score = 109 bits (120), Expect = 2e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| ||||| || | || || ||||| || ||||||| Sbjct 11744989 ATGCTGTGATAACAGTACCAGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11744930 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| ||| ||||| |||||||||| |||||||||||||| ||||| || |||||| Sbjct 11744929 CTGGAACTATCTCTGGTCTAAATGTTCTACGAATTATTAATGAGCCTACTGCTGCTGCTA 11744870 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 11744869 TTGCCTATGGGCT 11744857 Score = 95.1 bits (104), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| ||||| || | || || ||||| || ||||||| Sbjct 11762367 ATGCTGTGATAACAGTACCGGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11762426 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| || ||||| | ||||| || |||||||||||||| ||||| || |||||| Sbjct 11762427 CTGGAACGATCTCTGGTCTGAATGTACTGCGAATTATTAATGAGCCTACTGCTGCTGCTA 11762486 Query 451440 TAGCATATGG 451449 | || ||||| Sbjct 11762487 TTGCCTATGG 11762496 >seq17 Length=25916894 Score = 91.5 bits (100), Expect = 6e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| |||| || || || ||||||||||| | ||||| ||||| || ||||||| Sbjct 20568301 ATGCAGTTGTTACAGTACCTGCCTATTTCAATGACTCTCAACGACAAGCTACAAAAGATG 20568242 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| ||| |||| |||| || ||||| || || || ||||| || ||||| || Sbjct 20568241 CAGGGACCATTTCTGGACTAAACGTCCTTCGGATCATCAACGAACCAACTGCAGCCGCCA 20568182 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 20568181 TCGCTTATGGCCT 20568169 Score = 87.8 bits (96), Expect = 7e-12 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 452221 TCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTAC 452280 ||| || | |||||||||||| || |||||| || || || | |||||| ||||| Sbjct 12486090 TCAGGTATATGAAGGAGAACGAGCCATGACAAAGGACAACAACATTCTAGGAAAATTTGA 12486149 Query 452281 TCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGT 452340 || | |||||| ||| || | || || || |||||| | |||| |||| | Sbjct 12486150 GCTGACCGGCATTCCCCCTGCCCCCCGAGGTGTGCCACAGATTGAAGTGACCTTTGATAT 12486209 Query 452341 TGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA- 452398 |||||| ||||||||||| || ||| |||||| || || | || |||| || |||| Sbjct 12486210 TGATGCCAATGGTATTCTCAACGTGTCTGCAGTGGACAAGAGCA-CTGG-CAAGGAGAAC 12486267 Query 452399 AAAATTACAATTACTAATGATAAA 452422 || || || || |||||||| ||| Sbjct 12486268 AAGATAACTATCACTAATGACAAA 12486291 >seq8 Length=30410158 Score = 87.8 bits (96), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || |||||||| || || ||||| ||| ||||||| || ||| | || || || ||| Sbjct 4608634 GCGACCAAAGATGCTGGCCAGATTGCAGGTCTAAATGTACTCCGAGTCATCAACGAGCCT 4608575 Query 451427 ACAGCAGCTGCTCTAGCATATGGACT 451452 |||||||||||||| ||||||||||| Sbjct 4608574 ACAGCAGCTGCTCTGGCATATGGACT 4608549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975481942934828