Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 197 1e-44 seq16 113 3e-19 seq17 89.7 4e-12 >seq2 Length=37257225 Score = 197 bits (218), Expect = 1e-44 Identities = 959/1514 (63%), Gaps = 20/1514 (1%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 |||||| || || || || || |||| || ||| || | |||| ||| || || Sbjct 5827545 ATTAGTGATGGTGATCTTGTTCTCTTTGCCAGTGCTTTTGTCCACAGCAGACACGTTCAG 5827486 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||| || ||||| || | ||||| || ||||| || ||||| || || | | || || Sbjct 5827485 AATGCCGTTGGCGTCAATGTCAAAGGTCACTTCGATCTGAGGAACTCCACGTGGTGCGGG 5827426 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||||| || || || ||| | || || || || ||||| || | || || Sbjct 5827425 TGGGATGCCCGTCAGATCAAACTTCCCGAGCAGGTTGTTGTCTTTGGTCATGGCTCTCTC 5827366 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||| || | | ||||| ||| ||| || || |||| || || | || | | Sbjct 5827365 ACCTTCATACACCTGGATCAGAACCCCAGGCTGGTTGTCTGCGTACGTGCTGAAGATTTG 5827306 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 | | || || || || ||||| | | || | | ||||||| | || ||||| Sbjct 5827305 TGTCTGCTTGGTGGGGATGGTGGTGTTGCGTTTGATGAGAGTGGTCATGACTCCTCCTGC 5827246 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 || || | || || || || |||| ||||| | || | | | || | ||| | Sbjct 5827245 GGTCTCAATGCCCAGGGACAGTGGAGCCACATCCAGCAGCAGCAAGTCCTGGACGTTTCC 5827186 Query 517573 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 | || | || | || || || || |||| || ||||| || || || || || || Sbjct 5827185 AGAGGTGTCGCCCATGAGGATGGCGGCCTGAACTGCGGCACCGTAAGCTACCGCCTCGTC 5827126 Query 517633 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-A 517691 || || | ||| || |||| ||||| || | | ||||||| ||| | Sbjct 5827125 TGGGTTGATGCTTTTGTTCAGTTCCCGTCCATTAAAGGAGTCCTGCAGAAGTT-TCTGGA 5827067 Query 517692 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 517751 ||| || || | | || |||||||| | ||||||||||| | ||| ||||| |||| Sbjct 5827066 TCTTGGGGATTCTTGTAGAACCTCCAACCAGGACAATTTCATGGATCTGAGATTTGTCCA 5827007 Query 517752 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC 517811 || | ||| | | || || || || || || |||| |||| || |||| Sbjct 5827006 TCTTGGCATCTCTCAGGGCCTTCTCCACCGGCTCTAGCGTTCCTCTGAACAGATCCGAAC 5826947 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAA 517870 | | ||||| || ||||| || | | | | || || ||| | ||||| ||| Sbjct 5826946 ACAACTCTTCAAAGCGTGCTCTGGTGATGGA-AGAGTAAAAGTCAGTGCCTTCATACAGG 5826888 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 || || | |||||| | | ||||| || || || | | || || | ||||| Sbjct 5826887 GAGTCGATTTCAATGCTGGCTTGAGAGCTGGAGGACAGGGTTCTCTTGGCTCTCTCACAG 5826828 Query 517931 GCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCAAATCTGTTTTATATTT 517986 ||||| | || || | | |||| | | ||| |||| || | || | || Sbjct 5826827 GCTGTACGCAGCCTCCTCAGGGCTCTCTTGTTCTGGCTGATG----TCCTTCTTGTGCTT 5826772 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 ||||||||| || || ||| | | || || || || ||||| || || || |||| Sbjct 5826771 TCTCTTGAATTCCTCCACAAAGTGGTTGACCAGGCGGTTGTCAAAGTCCTCTCCGCCCAG 5826712 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | ||| | ||| | || ||| | |||| || | |||||||| | | || | | Sbjct 5826711 GTGAGTGTCTCCGGCTGTGGCTTTCACTTCAAAGATGCCATCTTCGATGGTCAGGATGGA 5826652 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGT 518165 ||||| ||| ||||| |||| ||||| || || | ||| ||| | ||||| Sbjct 5826651 CACATCGAAGGTACCACCTCCCAGGTCAAAGATCAGGATATTGCGCTCTCCTTTCTTGCC 5826592 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 ||| || || || || || | || ||||| || || || || || || |||| || | Sbjct 5826591 TTTG-TCCAGGCCGTAGGCGAGCGCTGCAGCTGTGGGCTCGTTGATGATCCTCAGGACGT 5826533 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | || |||||||| ||| |||||||||||||||||||| || || || || || || | Sbjct 5826532 TCAGTCCAGCAATCACTCCAGCATCTTTAGTGGCTTGTCTCTGAGAGTCATTGAAGTAGG 5826473 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 |||||||||||||||| || | ||||||| | |||| ||| || ||| ||| | Sbjct 5826472 CAGGAACAGTAATAACAGCGTTTGTTACTTTCTGTCCAAGATAGGCCTCTGCGATTTCCT 5826413 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA---TATTGCTTGGATTCAT 518402 ||||||| | || ||| || || || | || ||| || ||| ||| | | Sbjct 5826412 TCATTTTCACCAGAACCATGGAGGAGATCTCCTCAGGGTAAAAGGATTTCTT--CTCCCC 5826355 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGT 518462 |||| || |||| || | || || ||| | | | |||| || ||||| | Sbjct 5826354 TTTG-TACTCGACTTGAACCTTCGGCTTGCCTCCATCGCTGGTCACTTGGAAAGGCCAAT 5826296 Query 518463 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 518522 ||||| || || || || | | || | ||| | || ||||| | | || |||| Sbjct 5826295 GCTTCATGTCAGACTGTACGACTGGATCGTCAAACTTCCTGCCAATCAGCCTCTTGGCAT 5826236 Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||| | || || | || |||| | ||| || ||||||||||| || Sbjct 5826235 CAAACACTGTGTTGTTGGGGTTCAAGGCCACTTGGTTTTTTGCAGCATCTCCAATGAGCC 5826176 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || || || || | || || || ||||| | || || || ||||| |||| Sbjct 5826175 TCTCAGTGTCCGTGAAGGCCACGTAGCTGGGTGTTGTCCTGTTTCCCTGGTCATTAGCAA 5826116 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || || || || |||| || | || || ||||| | || || || | |||| Sbjct 5826115 TGATCTCCACGTTTCCATGCTGAAACACCCCCACACAGGAGTAGGTGGTGCCCAGGTCAA 5826056 Query 518703 TACCAATAGCAATT 518716 | |||| ||||||| Sbjct 5826055 TCCCAACAGCAATT 5826042 >seq16 Length=25964114 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| |||||||||||| || ||||||||||||| | |||| Sbjct 11744848 TTCTTGTCCAGCCCATAGGCAATAGCAGCAGCAGTAGGCTCATTAATAATTCGTAGAACA 11744907 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||| || |||| |||||||| |||||||| | || || ||||| || || Sbjct 11744908 TTTAGACCAGAGATAGTTCCAGCATCTTTTGTGGCTTGACGCTGAGAGTCGTTGAAGTAA 11744967 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || || || |||| Sbjct 11744968 GCTGGTACTGTTATCACAGCAT 11744989 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||||||||| || ||||||||||||| || ||||| ||||||| Sbjct 11762496 CCATAGGCAATAGCAGCAGCAGTAGGCTCATTAATAATTCGCAGTACATTCAGACCAGAG 11762437 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| |||||||| |||||||| | || || ||||| || || || || || || Sbjct 11762436 ATCGTTCCAGCATCTTTTGTGGCTTGACGCTGAGAGTCGTTGAAGTAAGCCGGTACTGTT 11762377 Query 518297 ATAACGGCAT 518306 || || |||| Sbjct 11762376 ATCACAGCAT 11762367 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| || || ||||| || || || || |||| | ||||||||||| ||||||| Sbjct 11761920 CAAAGATTGTGTTGGTGGGGTTCATGGCCACTTGGTTCTTGGCTGCATCACCAATCAACC 11761861 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||| | || || || | ||||| ||| || || || || ||||| ||||| |||| Sbjct 11761860 TTTCAGAATCAGTGAAGGCCACATAGCTTGGTGTGGTCCGGTTTCCTTGGTCATTGGCAA 11761801 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 11761800 TGATTTCAACTTTGCCATGCTGGAAGACTCCAACACATGAGTAGGTGGTCCCCAGATCAA 11761741 Query 518703 TACCAATAGC 518712 | |||| ||| Sbjct 11761740 TGCCAACAGC 11761731 >seq17 Length=25916894 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| || | || || ||||||||||| || || || | | || Sbjct 20568160 TTCTTGTCCAGGCCATAAGCGATGGCGGCTGCAGTTGGTTCGTTGATGATCCGAAGGACG 20568219 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| || ||||||| ||| || || || ||||| Sbjct 20568220 TTTAGTCCAGAAATGGTCCCTGCATCTTTTGTAGCTTGTCGTTGAGAGTCATTGAAATAG 20568279 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || |||| ||| |||| Sbjct 20568280 GCAGGTACTGTAACAACTGCAT 20568301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780358868810746