Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25 102 1e-16 seq18 91.5 2e-13 >seq25 Length=19457651 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | || |||||||| |||||| ||||||||||| || |||| ||||| Sbjct 18110021 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCT 18109962 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| |||| || ||| || ||||| ||||||||||| ||||||||| ||||| Sbjct 18109961 TCAGCCAGAAAATTGCAGCAAAA-GACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAA 18109903 Query 117412 GCAAAAAGGCGCTCG 117426 || | | |||||| Sbjct 18109902 GCCACCACTCGCTCG 18109888 >seq18 Length=24512808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||||||||| |||||||| | ||| ||||| |||| |||| | || || || || Sbjct 14427930 CTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACC 14427989 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||||| || |||||||| | |||||| || || || Sbjct 14427990 CAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCC 14428049 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||||||||| |||| | || || | ||||| Sbjct 14428050 GGTCTCCGTCTGAGACTCAATGATGGCGTACCACA 14428084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589911912366840