Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq28 158 3e-33 >seq28 Length=18419168 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| || || | |||||||| Sbjct 12497396 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCC 12497455 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||||||||| || Sbjct 12497456 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 12497515 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||||||||||||||||||| ||| || || |||||||| | ||| Sbjct 12497516 ATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 12497572 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | ||||| Sbjct 12497573 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497604 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| || || | |||||||| Sbjct 12497624 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCC 12497683 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||||||||| || Sbjct 12497684 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 12497743 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||||||||||||||||||| ||| || || |||||||| | ||| Sbjct 12497744 ATTTTAGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 12497800 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | ||||| Sbjct 12497801 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 12497832 Score = 158 bits (174), Expect = 3e-33 Identities = 164/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| || || | |||||||| Sbjct 12497852 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCC 12497911 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||||||||| || Sbjct 12497912 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 12497971 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || || |||||||| | ||| Sbjct 12497972 ATTTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 12498028 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| ||||| || || | ||||||| Sbjct 12498029 TTGCCAGTCAGGGTTTTCACAAAGATCTGCATTT 12498062 Score = 152 bits (168), Expect = 1e-31 Identities = 157/204 (77%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||| || || |||||||| |||| || || | |||||||| Sbjct 12497090 AACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTC 12497149 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || |||||||| ||||||||||||||||| || Sbjct 12497150 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 12497209 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||||| ||||||||||||||||||||| ||| || || ||||| || | || Sbjct 12497210 GATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGTGTGATGGT 12497266 Query 195108 CTTTCCTGTCAAAGTTTTTACGAA 195131 ||| || |||| ||||| || || Sbjct 12497267 CTTGCCAGTCAGGGTTTTCACAAA 12497290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109348815508547