Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24 98.7 1e-15 seq18 95.1 1e-14 >seq24 Length=19702765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||| || | || | |||||||||| |||||||| | Sbjct 12661647 CCTCATCTCTACTGATGAGCTCATTGGAGTAGGTGAGTCCAGGCATCAAACCTCTTTTCT 12661706 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||||||||| || || || || ||||| ||||| ||||| | Sbjct 12661707 TCAGCCAGAAGATGGCAGCAAATGATCCTGAGAAAAAGATCCCTTCGACTGCCGCAAACG 12661766 Query 19103 CAACTAGTC 19111 | |||| || Sbjct 12661767 CTACTAATC 12661775 >seq18 Length=24512808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||||| || | ||| ||| | || || | ||| || || | Sbjct 14415723 TCCAGCCATAGAAGTGCATACTGGTGAGTTTTCCATAGTTGGGCTCAGCAATGTGGATGT 14415782 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 |||| || || ||||| ||||| ||||| ||||| || || ||||| || || | | | Sbjct 14415783 TAAGTGACTGGCTCTGGTCAATGAATGCTCCTCTGTCTGCAGCCAT--CTTAATGACCAC 14415840 Query 47170 TTT--GTGGTATCTCCCATACTGTTTTATA 47197 ||| ||| |||||||||||||| ||||| Sbjct 14415841 TTTCTGTGAAATCTCCCATACTGTCTTATA 14415870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562043166771240