Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 141 7e-28 seq16 129 5e-24 seq17 87.8 1e-11 >seq2 Length=37257225 Score = 141 bits (156), Expect = 7e-28 Identities = 342/514 (67%), Gaps = 4/514 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 |||| ||||||| || |||| || || || || ||||| ||||| || || ||||| Sbjct 5826081 TGTGGGGGTGTTT--CAGCATGGAAACGTGGAGATCATTGCTAATGACCAGGGAAACAGG 5826138 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || || | |||||||| ||||| | |||| ||||| |||||| Sbjct 5826139 ACAACACCCAGCTACGTGGCCTTCACGGACACTGAGAGGCTCATTGGAGATGCTGCAAAA 5826198 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | |||| | || || | ||| || | |||||||| || | | ||||| || Sbjct 5826199 AACCAAGTGGCCTTGAACCCCAACAACACAGTGTTTGATGCCAAGAGGCTGATTGGCAGG 5826258 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 | ||| | ||| | || ||| | || ||||||||||||||||||||| | | Sbjct 5826259 AAGTTTGACGATCCAGTCGTACAGTCTGACATGAAGCATTGGCCTTTCCAAGTGACCAGC 5826318 Query 550265 GTTTCTGGAAAACCTTATATTGAAG-CTACTCATGAAGGATCTGTTAAACAATTTTCACC 550323 | | || || || | || ||| | | | | |||| ||| |||| || Sbjct 5826319 GATGGAGGCAAGCCGAAGGTTCAAGTCGAGT-ACAAAGGGGAGAAGAAATCCTTTTACCC 5826377 Query 550324 AGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGG 550383 || | || || || |||||| | |||||||||| ||| || || | | |||| Sbjct 5826378 TGAGGAGATCTCCTCCATGGTTCTGGTGAAAATGAAGGAAATCGCAGAGGCCTATCTTGG 5826437 Query 550384 TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCA 550443 || |||| || | || || || ||||| || || || || |||||||| || | || Sbjct 5826438 ACAGAAAGTAACAAACGCTGTTATTACTGTTCCTGCCTACTTCAATGACTCTCAGAGACA 5826497 Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||| ||||||||||||||| ||||||||||| || || || | || ||||| || || Sbjct 5826498 AGCCACTAAAGATGCTGGAGTGATTGCTGGACTGAACGTCCTGAGGATCATCAACGAGCC 5826557 Query 550504 TACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || ||||| || || || || || || || ||| Sbjct 5826558 CACAGCTGCAGCGCTCGCCTACGGCCTGGACAAA 5826591 Score = 116 bits (128), Expect = 3e-20 Identities = 436/680 (64%), Gaps = 4/680 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || || || || |||||||| || | || || || | ||||| ||| |||||| | Sbjct 5826823 ACAGCCTGTGAGAGAGCCAAGAGAACCCTGTCCTCCAGCTCTCAAGCCAGCATTGAAATC 5826882 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | | ||| || | ||| | | | | | || | || || |||||||| Sbjct 5826883 GACTCCCTGTATGAAGGCACTGACTTTTACTCTTCCATCACCAGAGCACGCTTTGAAGAG 5826942 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | ||||| ||||| || ||| ||| | || || || || | | | |||||| | Sbjct 5826943 TTGTGTTCGGATCTGTTCAGAGGAACGCTAGAGCCGGTGGAGAAGGCCCTGAGAGATGCC 5827002 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||||| || ||||| | | ||||||||||| || ||||| || ||||||||||| || Sbjct 5827003 AAGATGGACAAATCTCAGATCCATGAAATTGTCCTGGTTGGAGGTTCTACAAGAATCCCC 5827062 Query 552153 AAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 || | || |||| | | || || ||| ||||| || | || |||| | | Sbjct 5827063 AAGA-TCCAGAAACTTCTGCAGGACTCCTTT-AATGGACGGGAACTGAACAAAAGCATCA 5827120 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | ||||| ||||| || || || ||||||||| |||| || || || || || | | Sbjct 5827121 ACCCAGACGAGGCGGTAGCTTACGGTGCCGCAGTTCAGGCCGCCATCCTCATGGGCGACA 5827180 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || ||| | || | | | || | ||||| |||| || || || || | | Sbjct 5827181 CCTCTGGAAACGTCCAGGACTTGCTGCTGCTGGATGTGGCTCCACTGTCCCTGGGCATTG 5827240 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 | || | ||||| | ||||| | ||| ||| | | || || || || || || Sbjct 5827241 AGACCGCAGGAGGAGTCATGACCACTCTCATCAAACGCAACACCACCATCCCCACCAAGC 5827300 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | | | | || ||||| |||| || || ||| ||| || || | | || Sbjct 5827301 AGACACAAATCTTCAGCACGTACGCAGACAACCAGCCTGGGGTTCTGATCCAGGTGTATG 5827360 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||||| || || | || || | ||| || | || | Sbjct 5827361 AAGGTGAGAGAGCCATGACCAAAGACAACAACCTGCTCGGGAAGTTTGATCTGACGGGCA 5827420 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | || || || || |||||||| || || || ||||| || || || || || ||||| | Sbjct 5827421 TCCCACCCGCACCACGTGGAGTTCCTCAGATCGAAGTGACCTTTGACATTGACGCCAACG 5827480 Query 552571 GAATTTTGAATGTGACTGCT 552590 | ||| |||| ||| ||||| Sbjct 5827481 GCATTCTGAACGTGTCTGCT 5827500 >seq16 Length=25964114 Score = 129 bits (142), Expect = 5e-24 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || ||||| |||||||| || || || ||||| || |||||||| || ||||||| Sbjct 11744989 ATGCTGTGATAACAGTACCAGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11744930 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| |||| || |||||||| || ||||| ||||| |||||||||||||| Sbjct 11744929 CTGGAACTATCTCTGGTCTAAATGTTCTACGAATTATTAATGAGCCTACTGCTGCTGCTA 11744870 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 11744869 TTGCCTATGGGCTGGACAA 11744851 Score = 113 bits (124), Expect = 4e-19 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || ||||| ||||| || || || || ||||| || |||||||| || ||||||| Sbjct 11762367 ATGCTGTGATAACAGTACCGGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAAGATG 11762426 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || ||||| || || ||||| ||||| |||||||||||||| Sbjct 11762427 CTGGAACGATCTCTGGTCTGAATGTACTGCGAATTATTAATGAGCCTACTGCTGCTGCTA 11762486 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 11762487 TTGCCTATGG 11762496 Score = 96.9 bits (106), Expect = 3e-14 Identities = 168/239 (70%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 549947 TATGAATCTTATATTTTGACATA-AGATATAATGTCAAACAAAGTAGCTATAGGTATAGA 550005 ||||| |||||||||| || || | |||||| || | |||| | || || || Sbjct 11761687 TATGA--CTTATATTTTTCTTTATAGTAACAATGTCTAAGGGACCAGCTGTTGGCATTGA 11761744 Query 550006 TTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGC 550065 | | || ||||| || |||||||| || | || |||| ||||||||||| ||||| Sbjct 11761745 TCTGGGGACCACCTACTCATGTGTTGGAGTCTTCCAGCATGGCAAAGTTGAAATCATTGC 11761804 Query 550066 CAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTT 550125 |||||| ||||| ||| | || || ||| ||||| | ||||| || ||||| || Sbjct 11761805 CAATGACCAAGGAAACCGGACCACACCAAGCTATGTGGCCTTCACTGATTCTGAAAGGTT 11761864 Query 550126 AGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAATACTATTTTTG 550181 ||||||||||||| || | ||| |||| || || || ||||| || || |||| Sbjct 11761865 GATTGGTGATGCAGCCAAGAACCAAGTGGCCA-TG--AACCCCACCAACACAATCTTTG 11761920 >seq17 Length=25916894 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | || || || | || |||||||| ||||| ||||| Sbjct 20569109 ATGTCAAAAGGACCAGCAGTTGGAATTGACCTTGGCACCACATACTCGTGTGTGGGTGTC 20569050 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||| ||||| |||||||||||||| ||||| | || || || | Sbjct 20569049 TTTCAGCATGGCAAAGTCGAAATCATTGCCAATGATCAGGGTAATCGGACCACACCCAGT 20568990 Query 550097 TATGTTTCTTTCACGGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGC--C 550153 |||||| ||||||| || || || | | | | | || ||||| || ||| |||| | | Sbjct 20568989 TATGTTGCTTTCACTGACACGGAGAGACTGA-TCGGAGATGCTGCCAAAAATCAGGTTGC 20568931 Query 550154 ACTGGTAATCCTACCAATACTATTTTTG 550181 ||| ||||||||||| || | |||| Sbjct 20568930 CCTG--AATCCTACCAACACAGTGTTTG 20568905 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || | ||||| || ||||||| Sbjct 12484683 ATGCTGTTATCACAGTACCTGCCTACTTCAATGACTCCCAGAGGCAAGCCACAAAAGATG 12484742 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || ||| | || || || |||||||| || || || || || Sbjct 12484743 CTGGCACCATTTCTGGCCTGAATATCCTCCGCATCATCAATGAGCCAACAGCAGCAGCCA 12484802 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 12484803 TTGCCTATGGGCTGGACAAA 12484822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028802005792090