Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12 217 3e-51 seq26 215 1e-50 seq20 118 2e-21 seq28 113 8e-20 seq25 107 4e-18 seq18 104 4e-17 seq7 96.9 6e-15 seq11 87.8 3e-12 >seq12 Length=28145556 Score = 217 bits (240), Expect = 3e-51 Identities = 191/238 (80%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || | |||| |||||||| ||| ||||| || ||||| || || | Sbjct 25047549 GCTGACAGCCGCTGCTGACATGCCGCAGGACCTTCTGCTTGAGCTGCGCCACTTGTTCGC 25047490 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| | |||||||| | ||||| || |||||||| |||||||||||||| || | Sbjct 25047489 GCAGGAGCGACGCGGTGCTCGACAGGCCCGCGTTGTCCGACTTGAGCACCTTGACGCGGT 25047430 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||| || ||||||||||| ||||| |||||||||||||| |||||||| || | |||| Sbjct 25047429 CCTCGAGACGCGCGATGCGCTCCAGCTTGCGCCGGCGGCACTTGGTGGCAGCGAGTCGGT 25047370 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||| || | ||| || |||||||||||||| ||||||| |||||||||||| ||||| Sbjct 25047369 TCCTCAGGCGCTTGCGCTCCGCCTTGATGCGCTCCTGGTTCTCCATGTCGATAGGAGA 25047312 >seq26 Length=19081014 Score = 215 bits (238), Expect = 1e-50 Identities = 191/239 (80%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| || || || || |||| || ||||| ||| |||||||| || ||||| || | Sbjct 15618901 GCTGGCACCCGCTGCTCACGTGCGTCATGACCTTCTGCTTGAGTTGCGCTACCTGCTCGC 15618842 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| | ||||||||| |||||||| || |||||||||| ||| ||||||||||| || | Sbjct 15618841 GCAGCAGGGACGCGGTGTTGGACAGCCCGGCGTTGTCAGTCTTCAGCACCTTCACCTTGT 15618782 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||||| |||||| ||||| || ||||| ||||| |||||||| || | |||| Sbjct 15618781 CCTCCAGCCGCGAGATGCGCTCCAGCTTCCGCCGCCGGCACTTGGTGGCAGCGAGTCGGT 15618722 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| || || || |||||||| ||||| ||||||| ||||| ||| ||| Sbjct 15618721 TGCGCAGGCGCTTGCGCTCGGCTTTGATGCGCTCCTGCTCCTCCAGGTCGACCGGCGAC 15618663 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/115 (78%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| |||||||| || ||| | || ||||| | ||||||||| |||||||| || |||| Sbjct 15618868 TCTGCTTGAGTTGCGCTACCTGCTCGCGCAGCAGGGACGCGGTGTTGGACAGCCCGGCGT 15618809 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | |||| ||| |||| || ||||||||||||| |||||| |||||||| Sbjct 15618808 TGTCAGTCTTCAGCACCTTCACCTTGTCCTCCAGCCGCGAGATGCGCTCCAGCTT 15618754 >seq20 Length=22470590 Score = 118 bits (130), Expect = 2e-21 Identities = 180/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | | || ||| || |||| ||| ||||| || || ||||| Sbjct 17959041 AGCAGCTGGCAGCCGTTGTTCACGTGGTTCATGACCCGCTGCTTGAGCTGCGCGACCTGC 17958982 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACA-GTCCT-GC-GTTGTCAGACTTGAGCACCTTC 241501 || |||| ||| ||||| |||| | || || ||| | | ||| ||| ||| Sbjct 17958981 TCGCGCAACACGCTGGCGGT---GGACGCGAGCTCGCTGTTTTGCGTCTTCAGCGTCTTG 17958925 Query 241502 ACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCC 241561 ||||| |||||||| |||| ||| | ||||| || | | |||||| |||| ||| || Sbjct 17958924 ACTTTGTCCTCCAGGCGCGAGATCCTCTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCG 17958865 Query 241562 AAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATC 241621 | |||||| || || |||| || |||||||||||||| ||||| ||||||||||| Sbjct 17958864 ATGCGGTTGCGCAGCTTCTTGCGCTCCGCCTTGATGCGCTCCTGCGTGTCCATGTCGATG 17958805 Query 241622 GGAGACTTGGGT 241633 || ||| |||| Sbjct 17958804 GGTGACAGGGGT 17958793 >seq28 Length=18419168 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||||||||| | | || ||| || ||| | ||||||||| || || ||||| || || Sbjct 14964825 CTGACAGCCGTTGGTCACGTGGTTCATGACTTTCTGTTTGAGCTGCGCGACCTGCTCACG 14964884 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 || | | ||||| | ||| | | ||| | | ||| | |||||||| ||||| Sbjct 14964885 CAAGATGCTGGCGGTGGACGCCAGGTCAGAGTTCTGCGTCTTCAAGACCTTCACCTTCTC 14964944 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| || | ||||| |||||||| ||| |||||| |||| ||| || | ||| || Sbjct 14964945 CTCCAGGCGTGAAATGCGCTCCAGTTTCCGCTTGCGGCACTTGGAGGCCGCGATGCGATT 14965004 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||| || |||| | || |||||||| | |||||| ||| | ||| || || || Sbjct 14965005 CCGCAGCTTCTTCCTCTCGGCCTTGATTCTCTCCTGGGTCTCGAGGTCAATGGGCGA 14965061 >seq25 Length=19457651 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||||||||| | ||||||||| ||| || ||||| | ||||||| || Sbjct 18110019 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGGCCTGGCATAAGGCCCCTCTTCTTC 18109960 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||||||||| || ||||| |||||||||||||| |||||||| || || || || Sbjct 18109959 AGCCAGAAAATTGCAGCAAAAGACCCAGAGAAGAAGATTCCCTCCACAGCAGCAAAAGC 18109901 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||||||||| ||||| ||||| || ||||| | ||||| | ||| Sbjct 9231729 CATGACTTTCTGTTTGAGCTGGGCGACCTGTTCGCGCAGCATATTGGCGGTGGATGCCAG 9231788 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||| | ||||| ||| ||| || || ||||| || || | ||| | ||||| Sbjct 9231789 CTCTGAGTTTTGCGACTTCAGCGTCTTGACCTTGTCCTCGAGGCGGGAGATTCTCTCCAG 9231848 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | |||||| |||| || || | |||||| || | | ||| || || ||||| Sbjct 9231849 CTTCCTCTTGCGGCACTTGGAAGCGGCGATGCGGTTGCGCATGCGCTTGCGCTCGGCCTT 9231908 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 |||||| ||||| |||||||||||| || || Sbjct 9231909 GATGCGCTCCTGACTCTCCATGTCGATGGGCGA 9231941 >seq18 Length=24512808 Score = 104 bits (114), Expect = 4e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 213799 CCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 |||||| | ||||| ||||||| |||||| || || |||| ||| || ||| ||||||| Sbjct 14429315 CCCCGTTCGTCTCT-ACTCTCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAGG 14429373 Query 213858 TCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATG 213917 ||||||| ||| ||| || |||| ||| || || || || |||||||||||| Sbjct 14429374 TCCCTGGCTCTCTGCTCTTCTTTACCAGTGTTCTTCTTCAATTCCAGGAAGTCAAAGATG 14429433 Query 213918 TCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 || |||||| || |||| ||| || ||||| || || || |||| Sbjct 14429434 TCAAAGTGCCAGGGTTCCAAGTACATCGCAAAAGCTCCAGGTCTCT 14429479 Score = 100 bits (110), Expect = 5e-16 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 14427943 GTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACCCAGGTTCTGCTGG 14428002 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||||| | ||| | |||||||| | |||||| || | |||||||| Sbjct 14428003 -TTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCCGGTCTC 14428055 Score = 96.9 bits (106), Expect = 6e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||||| ||| || || |||||||||||||| ||| ||| ||||||||| Sbjct 14425580 GTGTAGGGCTCGATGGACTCATTATTGCCCAGAATCTGTGCTGTGGAGGCAGTGGGCATG 14425639 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||||| || |||||||| | || |||||| Sbjct 14425640 GGAGCCAAGAGCAGACTGTTGCGTACACCGTGC 14425672 >seq7 Length=31027439 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 241500 TCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTG 241559 ||||| ||||||||||||||||| || ||||| || ||| ||||| || | ||| | Sbjct 27359842 TCACTCGCTCCTCCAGCCGCGCGAGCCGCTCCAGCTTCCGCTTCCGGCACTTAGAGGCGG 27359901 Query 241560 CCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGA 241619 ||| |||||| | | | ||| | || || ||||| | ||||||||||||||||||| Sbjct 27359902 CCACGCGGTTTCTCATGCGCTTCCTCTCGGCTTTGATCCTCTCCTGGTCCTCCATGTCGA 27359961 Query 241620 TCGGAGAC 241627 | |||||| Sbjct 27359962 TGGGAGAC 27359969 >seq11 Length=28208075 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 39072 GGGAACCTCATCAGCTCGGCCGGTCTCCCGCTACCTTGCAGAGCCTCCACCAGCTTTTGA 39131 || || ||||||| ||| || |||||||| || |||||||| || ||||| | | Sbjct 12937691 GGAAATCTCATCATCTCAGCGGGTCTCCCACTCTGCTGCAGAGCACGAACTAGCTTCTTA 12937750 Query 39132 CACTGTGTGGTCTTTCCAGCCCTGTCCACTCCTTCCAATACCACAAGAGCTCCCCTCTTC 39191 ||||||||||| ||||||||| |||||||||| |||| || | | || ||||||||| Sbjct 12937751 CACTGTGTGGTTTTTCCAGCCTTGTCCACTCCCTCCAGCACGATTAAAG--CCCCTCTTC 12937808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931424031901440