Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25 105 1e-17 seq18 104 4e-17 >seq25 Length=19457651 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 |||||||| |||| || ||||||||||||||||| ||||| ||| || || ||||| Sbjct 18109886 GGCGAGCGAGTGGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCT 18109945 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || || |||||||| ||| ||| ||| ||||| || || ||| ||||| || ||| Sbjct 18109946 GCAATTTTCTGGCTGAAGAAGAGGGGCCTTATGCCAGGCCTCACCTTCTCCAATGAACTC 18110005 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| || |||| Sbjct 18110006 ATCAGCAGAGATGAGG 18110021 >seq18 Length=24512808 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||| |||||| |||| |||| | |||||||| || ||||||||||| |||||||| Sbjct 14427927 CACCTCATCCTTGCTGGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGT 14427986 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||||| | || || |||||||||| ||||||||||| | ||| | ||| Sbjct 14427987 ACCCAGGTTCTGCTGGTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGT 14428046 Query 221851 GCCAGTCTCCAGCTGAG 221867 ||| |||||| ||||| Sbjct 14428047 GCCGGTCTCCGTCTGAG 14428063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928736345759040